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The map label for this gene is tsf [H]

Identifier: 110834005

GI number: 110834005

Start: 1301397

End: 1302338

Strand: Direct

Name: tsf [H]

Synonym: ABO_1144

Alternate gene names: 110834005

Gene position: 1301397-1302338 (Clockwise)

Preceding gene: 110834004

Following gene: 110834006

Centisome position: 41.71

GC content: 52.76

Gene sequence:

>942_bases
ATGGTAGGCGGGCCTCGGGCTCGCCTGCTTTACCGAAACATACCTAATTTTAAGAGGATAATCATGGCTGCTGTAACTGC
TGCAATGGTTAAAGAGCTTCGCGAGCGTACTGGTCTTGGCATGATGGAATGCAAGAAGGCGCTGGTAGAGGCAGATGGCG
ACATCGAAAAAGCCATCGACGATATGCGTAAATCCGGCCAGGCCAAAGCGGCGAAGAAAGCAGGCCGCACCGCCGCCGAA
GGCGGTGTTGTAGTTGCTACCAACGACGCGAACACCGTAGCCGTTATGGTAGAGATCAACTCTGAAACTGATTTCGTTGC
CCGTGACGACAACTTCCTGGGTTTTTGCGACAAGGTAGCGGCTGCTGCTTTGAGCGCTGGTGAAACTGACGTTGCTAAAA
TTGGTGAGTTGAAGCTGGAAGACGGCTCCACTGTTGAAGAAGCACGCCAAGCGCTGGTTCAGAAAATCGGTGAAAACATC
CAGATCCGTCGTGCTGCCAAGCTAGAAGCGGAAGGCGCTATTGGCGCTTACGTTCACGGTGGCCGTATCGGCGTTCTGAT
CGCCCTGAAAGGTGGCGATGCCGAGTTGGGTAAAGATGTAGCTATGCATGTGGCTGCCGTTAACCCGATGGTTGTTAGTG
GCGATCAGGTTCCTGCTGATGTGCTGGAAAAAGAGAAAGAAATCATCCGTGCTCAGCCCGATATGGAAGGCAAGCCTGCT
GAGATCGTTGAAAAAATGCTCGGCGGCCGTATCAACAAGTTCCTGAAGGAAGTGAGCTTGTTGGATCAACCGTTCGTGAA
AGATCCGAACACCACTGTTGGTGCGCTGGTTAAAGCGGCTGGCGCCGAGGTTGCCTCTTTTGAGCGACTGGTTGTGGGTG
AAGGTATCGAAAAAGAAGAAGTCGATTTCGCTGCTGAAGTAGAAGCTGCGGCCAAGGGCTAA

Upstream 100 bases:

>100_bases
TCTGGAAGGCAAGCAGTATGCCCAGAATCAGACCGGCGGCGAGAGCGAATTCGTCGAGGTAGCAGATGAAGCCGCAGGCG
AAAAAGCCGAAGGTTAATCT

Downstream 100 bases:

>100_bases
GGCTGATTGGCGGAACTCGATGTGTAAAGGCGCCTTGCTGGTTTGATCAGCAGGGCGTTTTTTTCGCCTGTTAAACGGTG
AAAATAGAAAAGCACTTGCA

Product: translation elongation factor Ts

Products: NA

Alternate protein names: EF-Ts [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MVGGPRARLLYRNIPNFKRIIMAAVTAAMVKELRERTGLGMMECKKALVEADGDIEKAIDDMRKSGQAKAAKKAGRTAAE
GGVVVATNDANTVAVMVEINSETDFVARDDNFLGFCDKVAAAALSAGETDVAKIGELKLEDGSTVEEARQALVQKIGENI
QIRRAAKLEAEGAIGAYVHGGRIGVLIALKGGDAELGKDVAMHVAAVNPMVVSGDQVPADVLEKEKEIIRAQPDMEGKPA
EIVEKMLGGRINKFLKEVSLLDQPFVKDPNTTVGALVKAAGAEVASFERLVVGEGIEKEEVDFAAEVEAAAKG

Sequences:

>Translated_313_residues
MVGGPRARLLYRNIPNFKRIIMAAVTAAMVKELRERTGLGMMECKKALVEADGDIEKAIDDMRKSGQAKAAKKAGRTAAE
GGVVVATNDANTVAVMVEINSETDFVARDDNFLGFCDKVAAAALSAGETDVAKIGELKLEDGSTVEEARQALVQKIGENI
QIRRAAKLEAEGAIGAYVHGGRIGVLIALKGGDAELGKDVAMHVAAVNPMVVSGDQVPADVLEKEKEIIRAQPDMEGKPA
EIVEKMLGGRINKFLKEVSLLDQPFVKDPNTTVGALVKAAGAEVASFERLVVGEGIEKEEVDFAAEVEAAAKG
>Mature_313_residues
MVGGPRARLLYRNIPNFKRIIMAAVTAAMVKELRERTGLGMMECKKALVEADGDIEKAIDDMRKSGQAKAAKKAGRTAAE
GGVVVATNDANTVAVMVEINSETDFVARDDNFLGFCDKVAAAALSAGETDVAKIGELKLEDGSTVEEARQALVQKIGENI
QIRRAAKLEAEGAIGAYVHGGRIGVLIALKGGDAELGKDVAMHVAAVNPMVVSGDQVPADVLEKEKEIIRAQPDMEGKPA
EIVEKMLGGRINKFLKEVSLLDQPFVKDPNTTVGALVKAAGAEVASFERLVVGEGIEKEEVDFAAEVEAAAKG

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome [H]

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family [H]

Homologues:

Organism=Homo sapiens, GI171846268, Length=325, Percent_Identity=26.4615384615385, Blast_Score=93, Evalue=3e-19,
Organism=Escherichia coli, GI1786366, Length=291, Percent_Identity=54.2955326460481, Blast_Score=274, Evalue=6e-75,
Organism=Caenorhabditis elegans, GI17561440, Length=334, Percent_Identity=26.9461077844311, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI19921466, Length=304, Percent_Identity=27.9605263157895, Blast_Score=96, Evalue=3e-20,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449 [H]

Pfam domain/function: PF00889 EF_TS; PF00627 UBA [H]

EC number: NA

Molecular weight: Translated: 33066; Mature: 33066

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS01126 EF_TS_1 ; PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGGPRARLLYRNIPNFKRIIMAAVTAAMVKELRERTGLGMMECKKALVEADGDIEKAID
CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHH
DMRKSGQAKAAKKAGRTAAEGGVVVATNDANTVAVMVEINSETDFVARDDNFLGFCDKVA
HHHHCCCHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCEEECCCCCHHHHHHHH
AAALSAGETDVAKIGELKLEDGSTVEEARQALVQKIGENIQIRRAAKLEAEGAIGAYVHG
HHHHCCCCCCHHHHCCEEECCCCCHHHHHHHHHHHHCCCCEEEHHHHHCCCCCEEEEEEC
GRIGVLIALKGGDAELGKDVAMHVAAVNPMVVSGDQVPADVLEKEKEIIRAQPDMEGKPA
CEEEEEEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCHH
EIVEKMLGGRINKFLKEVSLLDQPFVKDPNTTVGALVKAAGAEVASFERLVVGEGIEKEE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHH
VDFAAEVEAAAKG
HHHHHHHHHHCCC
>Mature Secondary Structure
MVGGPRARLLYRNIPNFKRIIMAAVTAAMVKELRERTGLGMMECKKALVEADGDIEKAID
CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHH
DMRKSGQAKAAKKAGRTAAEGGVVVATNDANTVAVMVEINSETDFVARDDNFLGFCDKVA
HHHHCCCHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEECCCCCEEECCCCCHHHHHHHH
AAALSAGETDVAKIGELKLEDGSTVEEARQALVQKIGENIQIRRAAKLEAEGAIGAYVHG
HHHHCCCCCCHHHHCCEEECCCCCHHHHHHHHHHHHCCCCEEEHHHHHCCCCCEEEEEEC
GRIGVLIALKGGDAELGKDVAMHVAAVNPMVVSGDQVPADVLEKEKEIIRAQPDMEGKPA
CEEEEEEEEECCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCHH
EIVEKMLGGRINKFLKEVSLLDQPFVKDPNTTVGALVKAAGAEVASFERLVVGEGIEKEE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCHHH
VDFAAEVEAAAKG
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA