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The map label for this gene is yncD [H]

Identifier: 110833965

GI number: 110833965

Start: 1253658

End: 1255754

Strand: Direct

Name: yncD [H]

Synonym: ABO_1104

Alternate gene names: 110833965

Gene position: 1253658-1255754 (Clockwise)

Preceding gene: 110833964

Following gene: 110833966

Centisome position: 40.18

GC content: 53.46

Gene sequence:

>2097_bases
ATGAGAAAGCCGTTTTTATTATTATTTTGCCTTACGGCACCCGCTTGGGCTAACCAGCTGGATCCCGTGCTCGTGAATGA
CCAGCCAGAGCACAATACGCTTTCTGTCTCTCCTGAAGTTCGCCGTAGTGAGTTGTTTGTAGAAAGCCGTTCAGTGGGGG
TGCTGGATGTGGAGAGCATTGAAGATGGCCATGTGGCTAATCAGGAAGACCTTTTCAAGCGGACCCCTGGTGTTTGGGTT
GCTAATCAGAATGGCGGCGATGATGTGTTTCTGTCTATCCGGGGCTCAGGGCTGTCCACGACCAGTTTTGGCCGGGGTAT
CGTTAGCTATCAGGATGGGGTGCCCCTATCACGGCTGGATAATGGCACGACCAACCAGTTAATCGATCCGTTGTCTTACC
GTTATGTGGAAGTGTACCGGGGCGCCAGTGCACTGACGCTTGGCGCATCGGCTCTGGGTGGTGCTATTAACTATGTCAGT
GAGACAGGCCGCACCGCACCGGGTATTCGGTTGCGTACCGAATTGGGTGATTACGGCTGGCGGGCCAACCGCATTACCCT
CGGGGGCAAGAAAGGCAATATGGATGGTTACCTGTCCTTGAGTCAGTCTGATTACCGGGGTTACCGCGATCACTCCAGCC
AGTATAACAAACGTGCCTCTGGTAACTTCGGTGTGCTTTTCGATAACGGTATCGAAAACCGGACCTATTTTTCTTCGGAT
GACGCTCAGCTGGAGTTGCCTGGCAGTATCCGCCGAGACCGCCTTGAAGACGATAGTCAGGAGGCTGGGGCATTTAATAA
ATCGTTCGATACGGATCGAAACTGGCGCGCAATCCGTTTGGCCAACCGTACTCTGATTCCTCTGGCGGGGGATCAACAAC
TTGTGGCCAGTGTCTTTTATAACCGGACTAACCTTGATCATTTGCCGACCCCTTTTGTGGGGATTATTGATAACAGCAGT
GAGTCTATTGGTGGCGCAGTGGATTATCGAAAGCACTGGAGCAAAGGGCATACCTTGCTGGCGGGGCTGCGATATTCCTA
TGGCCATGACGATAACACTCGCTTCCAACATGCACAGAACGGTAAGCAAAAGGGAAATCAGTTCCTCGATGATGTGTTTC
GTGTGAAACAGGTGGAGGCTTATGCTGAACAGCAATGGCAAGTCAGCGATCGCTGGCGGGTAGCGCTGGGGGCGCAATGG
GTCGAGTCCGAACGTAGTTTGGATGATCTGCAAGCCAGCGTGCCGCCATTGTGCAGTAACTGCCCATTCTTTCCGCAGCC
TTCCGGTGAGGCTGTGGACGACAGTTATACGGTGGATATGGGGGGCTTTTCCCCGAAGCTGGGCTTAAGCTTTACCCCGT
TAGCAGGGCAAACCCTGTTCGTTCAGGTAGCACAGAGTATCGGTATGCCCTCCGGCTCAGAGCTAGGGGCACAGCCTGTG
CCCGGATTACGCTTGGAGCAGCAGGAAGCCACCACCATCGAGCTTGGTTGGCGTGGCGTGGGTGATGTGCTGGACTGGGA
TATGGTGCTTTACCACGCCAATGTTGAAGATGAGCTGCTTAATATTGAAGTAAACGATGTGACAGCATTGTTCAATTCCC
CCACTGATACAATTCACCAAGGGCTCGAAGCGGGTATCACTTGGCGCCTTCCCGGCAAAGAAAATGTGGCGCTGCAGACG
GTCTACAATTGGTCCGATTTCACCTTTGATGACGATCCGATTTACGGAGACAATCAACTACCCGGCATTCCTGAGCACAC
TATTTTTACCGCCTTGCAGTGGCGCCCTTCTGCCCAGGTTTTGGTTGAGCCGAATCTGCGTTATGTCAGTGGTTATCCGC
TCACCTATACCAACAGCGGTGGCCGCTATTGGGAAACCGCGGGCTATTCGGTTTGGGGGTTGCGCTTGAGTCGTGAGTTC
AACAACGGTCTGAAAGTATATTTCGATGGCCGCAATCTGGGCGATAAAGTGTATGCCAGCACCGGCAGTATCAGCACGGC
ACCGGCGTTAGCCTCTCCGTTTAATCCCAACCCAGTGGCCAGCGTTACCCCCGGTATTGGCCGCTCACTTTATGTCGGCG
CGGAGTATCGTCTGTGA

Upstream 100 bases:

>100_bases
GCTAATCGCGACAACAACCGTTCTGCCGCGACAATTCGCCGCATTAGACCCTCCTTATGAACCACTATACTCGCGACCTA
CTGTTATTTCGGGGAAGGTC

Downstream 100 bases:

>100_bases
TGCGTTTTCTGATGACTTGGCATCGCCGCGCAGCCTGGTTAGTCGCGGTGCCATTGATGTTATGGTTACTGAGCGGGCTG
TTACATCCCTTGATGGCGTG

Product: outer membrane siderophore receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MRKPFLLLFCLTAPAWANQLDPVLVNDQPEHNTLSVSPEVRRSELFVESRSVGVLDVESIEDGHVANQEDLFKRTPGVWV
ANQNGGDDVFLSIRGSGLSTTSFGRGIVSYQDGVPLSRLDNGTTNQLIDPLSYRYVEVYRGASALTLGASALGGAINYVS
ETGRTAPGIRLRTELGDYGWRANRITLGGKKGNMDGYLSLSQSDYRGYRDHSSQYNKRASGNFGVLFDNGIENRTYFSSD
DAQLELPGSIRRDRLEDDSQEAGAFNKSFDTDRNWRAIRLANRTLIPLAGDQQLVASVFYNRTNLDHLPTPFVGIIDNSS
ESIGGAVDYRKHWSKGHTLLAGLRYSYGHDDNTRFQHAQNGKQKGNQFLDDVFRVKQVEAYAEQQWQVSDRWRVALGAQW
VESERSLDDLQASVPPLCSNCPFFPQPSGEAVDDSYTVDMGGFSPKLGLSFTPLAGQTLFVQVAQSIGMPSGSELGAQPV
PGLRLEQQEATTIELGWRGVGDVLDWDMVLYHANVEDELLNIEVNDVTALFNSPTDTIHQGLEAGITWRLPGKENVALQT
VYNWSDFTFDDDPIYGDNQLPGIPEHTIFTALQWRPSAQVLVEPNLRYVSGYPLTYTNSGGRYWETAGYSVWGLRLSREF
NNGLKVYFDGRNLGDKVYASTGSISTAPALASPFNPNPVASVTPGIGRSLYVGAEYRL

Sequences:

>Translated_698_residues
MRKPFLLLFCLTAPAWANQLDPVLVNDQPEHNTLSVSPEVRRSELFVESRSVGVLDVESIEDGHVANQEDLFKRTPGVWV
ANQNGGDDVFLSIRGSGLSTTSFGRGIVSYQDGVPLSRLDNGTTNQLIDPLSYRYVEVYRGASALTLGASALGGAINYVS
ETGRTAPGIRLRTELGDYGWRANRITLGGKKGNMDGYLSLSQSDYRGYRDHSSQYNKRASGNFGVLFDNGIENRTYFSSD
DAQLELPGSIRRDRLEDDSQEAGAFNKSFDTDRNWRAIRLANRTLIPLAGDQQLVASVFYNRTNLDHLPTPFVGIIDNSS
ESIGGAVDYRKHWSKGHTLLAGLRYSYGHDDNTRFQHAQNGKQKGNQFLDDVFRVKQVEAYAEQQWQVSDRWRVALGAQW
VESERSLDDLQASVPPLCSNCPFFPQPSGEAVDDSYTVDMGGFSPKLGLSFTPLAGQTLFVQVAQSIGMPSGSELGAQPV
PGLRLEQQEATTIELGWRGVGDVLDWDMVLYHANVEDELLNIEVNDVTALFNSPTDTIHQGLEAGITWRLPGKENVALQT
VYNWSDFTFDDDPIYGDNQLPGIPEHTIFTALQWRPSAQVLVEPNLRYVSGYPLTYTNSGGRYWETAGYSVWGLRLSREF
NNGLKVYFDGRNLGDKVYASTGSISTAPALASPFNPNPVASVTPGIGRSLYVGAEYRL
>Mature_698_residues
MRKPFLLLFCLTAPAWANQLDPVLVNDQPEHNTLSVSPEVRRSELFVESRSVGVLDVESIEDGHVANQEDLFKRTPGVWV
ANQNGGDDVFLSIRGSGLSTTSFGRGIVSYQDGVPLSRLDNGTTNQLIDPLSYRYVEVYRGASALTLGASALGGAINYVS
ETGRTAPGIRLRTELGDYGWRANRITLGGKKGNMDGYLSLSQSDYRGYRDHSSQYNKRASGNFGVLFDNGIENRTYFSSD
DAQLELPGSIRRDRLEDDSQEAGAFNKSFDTDRNWRAIRLANRTLIPLAGDQQLVASVFYNRTNLDHLPTPFVGIIDNSS
ESIGGAVDYRKHWSKGHTLLAGLRYSYGHDDNTRFQHAQNGKQKGNQFLDDVFRVKQVEAYAEQQWQVSDRWRVALGAQW
VESERSLDDLQASVPPLCSNCPFFPQPSGEAVDDSYTVDMGGFSPKLGLSFTPLAGQTLFVQVAQSIGMPSGSELGAQPV
PGLRLEQQEATTIELGWRGVGDVLDWDMVLYHANVEDELLNIEVNDVTALFNSPTDTIHQGLEAGITWRLPGKENVALQT
VYNWSDFTFDDDPIYGDNQLPGIPEHTIFTALQWRPSAQVLVEPNLRYVSGYPLTYTNSGGRYWETAGYSVWGLRLSREF
NNGLKVYFDGRNLGDKVYASTGSISTAPALASPFNPNPVASVTPGIGRSLYVGAEYRL

Specific function: Probable receptor, tonB-dependent [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=699, Percent_Identity=23.4620886981402, Blast_Score=109, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 77156; Mature: 77156

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKPFLLLFCLTAPAWANQLDPVLVNDQPEHNTLSVSPEVRRSELFVESRSVGVLDVESI
CCCCEEEEEEECCCHHHCCCCCEEECCCCCCCEEECCCCHHHHHEEEECCCCCEEEECCC
EDGHVANQEDLFKRTPGVWVANQNGGDDVFLSIRGSGLSTTSFGRGIVSYQDGVPLSRLD
CCCCCCCHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCHHHCC
NGTTNQLIDPLSYRYVEVYRGASALTLGASALGGAINYVSETGRTAPGIRLRTELGDYGW
CCCHHHHHCCHHHHEEEECCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
RANRITLGGKKGNMDGYLSLSQSDYRGYRDHSSQYNKRASGNFGVLFDNGIENRTYFSSD
CCCEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCEEECCC
DAQLELPGSIRRDRLEDDSQEAGAFNKSFDTDRNWRAIRLANRTLIPLAGDQQLVASVFY
CCEEECCCCHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEECCEEEEECCCHHHHHHHHH
NRTNLDHLPTPFVGIIDNSSESIGGAVDYRKHWSKGHTLLAGLRYSYGHDDNTRFQHAQN
CCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHC
GKQKGNQFLDDVFRVKQVEAYAEQQWQVSDRWRVALGAQWVESERSLDDLQASVPPLCSN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCHHHHHHCCCCHHCC
CPFFPQPSGEAVDDSYTVDMGGFSPKLGLSFTPLAGQTLFVQVAQSIGMPSGSELGAQPV
CCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
PGLRLEQQEATTIELGWRGVGDVLDWDMVLYHANVEDELLNIEVNDVTALFNSPTDTIHQ
CCCEECCCCCCEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEHHEEEEECCCHHHHHH
GLEAGITWRLPGKENVALQTVYNWSDFTFDDDPIYGDNQLPGIPEHTIFTALQWRPSAQV
HHHCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCEE
LVEPNLRYVSGYPLTYTNSGGRYWETAGYSVWGLRLSREFNNGLKVYFDGRNLGDKVYAS
EECCCCEEEECCCEEEECCCCCEEEECCCEEEEEEEEECCCCCCEEEECCCCCCCEEEEC
TGSISTAPALASPFNPNPVASVTPGIGRSLYVGAEYRL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MRKPFLLLFCLTAPAWANQLDPVLVNDQPEHNTLSVSPEVRRSELFVESRSVGVLDVESI
CCCCEEEEEEECCCHHHCCCCCEEECCCCCCCEEECCCCHHHHHEEEECCCCCEEEECCC
EDGHVANQEDLFKRTPGVWVANQNGGDDVFLSIRGSGLSTTSFGRGIVSYQDGVPLSRLD
CCCCCCCHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCHHHCC
NGTTNQLIDPLSYRYVEVYRGASALTLGASALGGAINYVSETGRTAPGIRLRTELGDYGW
CCCHHHHHCCHHHHEEEECCCCCEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC
RANRITLGGKKGNMDGYLSLSQSDYRGYRDHSSQYNKRASGNFGVLFDNGIENRTYFSSD
CCCEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCEEECCC
DAQLELPGSIRRDRLEDDSQEAGAFNKSFDTDRNWRAIRLANRTLIPLAGDQQLVASVFY
CCEEECCCCHHHHCCCCCCHHCCCCCCCCCCCCCEEEEEEECCEEEEECCCHHHHHHHHH
NRTNLDHLPTPFVGIIDNSSESIGGAVDYRKHWSKGHTLLAGLRYSYGHDDNTRFQHAQN
CCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHC
GKQKGNQFLDDVFRVKQVEAYAEQQWQVSDRWRVALGAQWVESERSLDDLQASVPPLCSN
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHCCHHHHHHCCCCHHCC
CPFFPQPSGEAVDDSYTVDMGGFSPKLGLSFTPLAGQTLFVQVAQSIGMPSGSELGAQPV
CCCCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCCCCCC
PGLRLEQQEATTIELGWRGVGDVLDWDMVLYHANVEDELLNIEVNDVTALFNSPTDTIHQ
CCCEECCCCCCEEEECCCCCCCCCCEEEEEEECCCCCEEEEEEEHHEEEEECCCHHHHHH
GLEAGITWRLPGKENVALQTVYNWSDFTFDDDPIYGDNQLPGIPEHTIFTALQWRPSAQV
HHHCCEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCEE
LVEPNLRYVSGYPLTYTNSGGRYWETAGYSVWGLRLSREFNNGLKVYFDGRNLGDKVYAS
EECCCCEEEECCCEEEECCCCCEEEECCCEEEEEEEEECCCCCCEEEECCCCCCCEEEEC
TGSISTAPALASPFNPNPVASVTPGIGRSLYVGAEYRL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]