BacMap

Definition	Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession	NC_008260
Length	3,120,143

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The map label for this gene is acdS [C]

Identifier: 110833964

GI number: 110833964

Start: 1252740

End: 1253522

Strand: Direct

Name: acdS [C]

Synonym: ABO_1103

Alternate gene names: 110833964

Gene position: 1252740-1253522 (Clockwise)

Preceding gene: 110833963

Following gene: 110833965

Centisome position: 40.15

GC content: 54.41

Gene sequence:

>783_bases
ATGCAAATTTTCAATGGAAAAACGGCACTGGTCACCGGTGCCTCCAGCGGCATTGGTCAGGAGCTCTCTCGTCAGCTTGC
GGCGATGGGATGTAACCTGATTTTGGTGGCTCGCCGTACTGAGCGGTTGGAAGCGCTTGCGGCTGAATTATGCAGGGTGT
CTGTTTGCGTAATTACGTCAGATTTGGCCGACCCTTTGGTGCCACAGCAGCTGTTTGATGAGGTGGCCCGCCGTGGTCTG
AAGGTGGATATTCTGATTAATAATGCGGGCTATGGGTATCAGAAAAACCTGTTGGAGTTATCGCTGGAACAAACACTCGG
CATGCTAGAGGTGAACGACCGCGCTTTGCTGGCTCTCACCCGGTTATTTGCTGAGCCCATGGCGGAGAGGGGTGAGGGAT
GGATTTTGAATATCAGTTCTGTCTCTGCTTGGTTTCCGATTCCTGGTATGGCGACTTATGCTGCCAGTAAGGCGTTTGTG
CAAACACTGGGCCGTGCTTTACACGAAGAATTGAAGCCTTGCGGGATTGTCGTCACTACCTTGAGTCCAGGTGGTACCCG
CACCGAATTTTCCAGCAAGGCCCGTGGGGAAATGGATCCGTCGCTGCAGAGAACCATGATGGCAGTGAGCCCGGTGGCTC
GTGCCGGTTTGGTAGGCCTTGCCAAAGGGAAGGCGGTGGTGATCCCCGGCTGGCTTTACCGTTTAATGACGTTCATAACA
CGTTGCCTGCCTGAACGTTGGGCGGTTCGACTTGCTGGCAGTGTGATGGGGCGTCATCGCTAG

Upstream 100 bases:

>100_bases
ATGAATGTGGGCGGAACACCCACATACCGTAAGGCGGTTTCGCGTTTTTGAATCTTGAACTCATTCTTCTGGGCAGGTTG
AAAGCTACAAGAGCAAAGCA

Downstream 100 bases:

>100_bases
GTTTAGGCATTGTTTGTCCCGTTTTTTGTTGCGTCGCTAATCGCGACAACAACCGTTCTGCCGCGACAATTCGCCGCATT
AGACCCTCCTTATGAACCAC

Product: short-chain acyl CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MQIFNGKTALVTGASSGIGQELSRQLAAMGCNLILVARRTERLEALAAELCRVSVCVITSDLADPLVPQQLFDEVARRGL
KVDILINNAGYGYQKNLLELSLEQTLGMLEVNDRALLALTRLFAEPMAERGEGWILNISSVSAWFPIPGMATYAASKAFV
QTLGRALHEELKPCGIVVTTLSPGGTRTEFSSKARGEMDPSLQRTMMAVSPVARAGLVGLAKGKAVVIPGWLYRLMTFIT
RCLPERWAVRLAGSVMGRHR

Sequences:

>Translated_260_residues
MQIFNGKTALVTGASSGIGQELSRQLAAMGCNLILVARRTERLEALAAELCRVSVCVITSDLADPLVPQQLFDEVARRGL
KVDILINNAGYGYQKNLLELSLEQTLGMLEVNDRALLALTRLFAEPMAERGEGWILNISSVSAWFPIPGMATYAASKAFV
QTLGRALHEELKPCGIVVTTLSPGGTRTEFSSKARGEMDPSLQRTMMAVSPVARAGLVGLAKGKAVVIPGWLYRLMTFIT
RCLPERWAVRLAGSVMGRHR
>Mature_260_residues
MQIFNGKTALVTGASSGIGQELSRQLAAMGCNLILVARRTERLEALAAELCRVSVCVITSDLADPLVPQQLFDEVARRGL
KVDILINNAGYGYQKNLLELSLEQTLGMLEVNDRALLALTRLFAEPMAERGEGWILNISSVSAWFPIPGMATYAASKAFV
QTLGRALHEELKPCGIVVTTLSPGGTRTEFSSKARGEMDPSLQRTMMAVSPVARAGLVGLAKGKAVVIPGWLYRLMTFIT
RCLPERWAVRLAGSVMGRHR

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4557649, Length=190, Percent_Identity=35.7894736842105, Blast_Score=109, Evalue=2e-24,
Organism=Homo sapiens, GI7705855, Length=243, Percent_Identity=28.3950617283951, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI226371731, Length=195, Percent_Identity=32.8205128205128, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI7706318, Length=264, Percent_Identity=29.1666666666667, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI20149619, Length=230, Percent_Identity=32.1739130434783, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI109715829, Length=211, Percent_Identity=34.1232227488152, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI32483357, Length=188, Percent_Identity=28.7234042553192, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI157739938, Length=211, Percent_Identity=29.3838862559242, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI210032110, Length=248, Percent_Identity=27.4193548387097, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI7705925, Length=217, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI32455239, Length=159, Percent_Identity=30.8176100628931, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI5031765, Length=159, Percent_Identity=30.8176100628931, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI142976729, Length=248, Percent_Identity=26.2096774193548, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI33667109, Length=205, Percent_Identity=29.7560975609756, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI31542939, Length=193, Percent_Identity=31.6062176165803, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI5031737, Length=199, Percent_Identity=28.643216080402, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4503817, Length=190, Percent_Identity=26.3157894736842, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI40254992, Length=191, Percent_Identity=26.1780104712042, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1787820, Length=208, Percent_Identity=30.7692307692308, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87082100, Length=214, Percent_Identity=33.1775700934579, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=31.404958677686, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=30.3191489361702, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI87082160, Length=236, Percent_Identity=28.3898305084746, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=31.5789473684211, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790717, Length=213, Percent_Identity=26.7605633802817, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789208, Length=216, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788459, Length=204, Percent_Identity=24.0196078431373, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787905, Length=222, Percent_Identity=28.8288288288288, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=207, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=7e-21,
Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=29.9492385786802, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17562906, Length=200, Percent_Identity=30, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=32.0855614973262, Blast_Score=84, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=184, Percent_Identity=32.0652173913043, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=241, Percent_Identity=30.7053941908714, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=198, Percent_Identity=29.7979797979798, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI193204405, Length=197, Percent_Identity=29.9492385786802, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=202, Percent_Identity=30.1980198019802, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=197, Percent_Identity=27.9187817258883, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=196, Percent_Identity=30.1020408163265, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=193, Percent_Identity=26.9430051813472, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=211, Percent_Identity=27.9620853080569, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI115534694, Length=214, Percent_Identity=28.5046728971963, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=205, Percent_Identity=29.7560975609756, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=220, Percent_Identity=30, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=215, Percent_Identity=28.3720930232558, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17531453, Length=201, Percent_Identity=30.3482587064677, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=218, Percent_Identity=27.0642201834862, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=214, Percent_Identity=26.1682242990654, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI212646214, Length=209, Percent_Identity=28.2296650717703, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=206, Percent_Identity=28.1553398058252, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=169, Percent_Identity=30.1775147928994, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=168, Percent_Identity=30.3571428571429, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17536651, Length=222, Percent_Identity=26.5765765765766, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=199, Percent_Identity=29.6482412060301, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=219, Percent_Identity=27.8538812785388, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=198, Percent_Identity=25.7575757575758, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17559552, Length=191, Percent_Identity=27.2251308900524, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17557668, Length=193, Percent_Identity=27.4611398963731, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=201, Percent_Identity=30.3482587064677, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=203, Percent_Identity=26.6009852216749, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6319635, Length=251, Percent_Identity=29.4820717131474, Blast_Score=85, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=30.5699481865285, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322067, Length=192, Percent_Identity=30.2083333333333, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24584752, Length=233, Percent_Identity=34.3347639484979, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=36.4102564102564, Blast_Score=107, Evalue=5e-24,
Organism=Drosophila melanogaster, GI24644339, Length=215, Percent_Identity=34.4186046511628, Blast_Score=105, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24584744, Length=194, Percent_Identity=35.5670103092784, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI28574402, Length=194, Percent_Identity=35.5670103092784, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24640442, Length=252, Percent_Identity=29.3650793650794, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24584748, Length=196, Percent_Identity=33.6734693877551, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI161076933, Length=196, Percent_Identity=33.6734693877551, Blast_Score=95, Evalue=4e-20,
Organism=Drosophila melanogaster, GI23397609, Length=244, Percent_Identity=30.7377049180328, Blast_Score=94, Evalue=7e-20,
Organism=Drosophila melanogaster, GI28571526, Length=202, Percent_Identity=32.6732673267327, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21357041, Length=202, Percent_Identity=32.6732673267327, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=32.512315270936, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24580925, Length=199, Percent_Identity=31.1557788944724, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24643142, Length=218, Percent_Identity=32.5688073394495, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=32.0652173913043, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI21355631, Length=256, Percent_Identity=26.171875, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI21355319, Length=219, Percent_Identity=26.9406392694064, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24649181, Length=264, Percent_Identity=27.6515151515151, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221331216, Length=191, Percent_Identity=29.3193717277487, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24665247, Length=191, Percent_Identity=29.3193717277487, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28571387, Length=233, Percent_Identity=27.8969957081545, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641232, Length=234, Percent_Identity=25.6410256410256, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221331218, Length=190, Percent_Identity=28.9473684210526, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24665243, Length=190, Percent_Identity=28.9473684210526, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24639444, Length=185, Percent_Identity=30.2702702702703, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007234, Length=209, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28215; Mature: 28215

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIFNGKTALVTGASSGIGQELSRQLAAMGCNLILVARRTERLEALAAELCRVSVCVITS
CCEECCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHEEEH
DLADPLVPQQLFDEVARRGLKVDILINNAGYGYQKNLLELSLEQTLGMLEVNDRALLALT
HHCCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCEEEECCHHHHHHH
RLFAEPMAERGEGWILNISSVSAWFPIPGMATYAASKAFVQTLGRALHEELKPCGIVVTT
HHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LSPGGTRTEFSSKARGEMDPSLQRTMMAVSPVARAGLVGLAKGKAVVIPGWLYRLMTFIT
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECHHHHHHHHHHH
RCLPERWAVRLAGSVMGRHR
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQIFNGKTALVTGASSGIGQELSRQLAAMGCNLILVARRTERLEALAAELCRVSVCVITS
CCEECCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHEEEH
DLADPLVPQQLFDEVARRGLKVDILINNAGYGYQKNLLELSLEQTLGMLEVNDRALLALT
HHCCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCEEEECCHHHHHHH
RLFAEPMAERGEGWILNISSVSAWFPIPGMATYAASKAFVQTLGRALHEELKPCGIVVTT
HHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
LSPGGTRTEFSSKARGEMDPSLQRTMMAVSPVARAGLVGLAKGKAVVIPGWLYRLMTFIT
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCEEEECHHHHHHHHHHH
RCLPERWAVRLAGSVMGRHR
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]