| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is yhcX [H]
Identifier: 110833956
GI number: 110833956
Start: 1240954
End: 1242486
Strand: Direct
Name: yhcX [H]
Synonym: ABO_1095
Alternate gene names: 110833956
Gene position: 1240954-1242486 (Clockwise)
Preceding gene: 110833955
Following gene: 110833957
Centisome position: 39.77
GC content: 55.06
Gene sequence:
>1533_bases ATGGCAGAAGAAACCACTCGGTTACGTTTGCGAACGCTGACGCACGAGGATTATCCCGCGTTGGCGCGCCTGATGAATCA GGTGTATCACGATATTGGTGGCGCCTGGCCAGAAGACACCATCAAAACCCTGATCCGCATTTTTCAAGACGGGCAGCTGG TGATTGAAGACAACGGCGAACTGGTGGCCACGGCACTGACTATCAAAGTTAAATACGACCGGTTCTCCAACCCGCATCGC TACGAAGACCTGATTACCGACGACAAAGTGCGCTCCCACGACAACAAGGGCGATGCGCTTTACGGCCTAGATGTATTTGT AGACAAGGAATACCGCGGCTATCGCCTGGGCCGCCGCTTGTACGAAGCTCGCAAAGAATTGTGCCGGGAAGAGAATCTAC GTGCGATTTTGGCGGGTGGTCGCCTGCCGGGGTATACCAACTACGCTGACCAGATGCCGGTGACCGAATACATCGAGCAG GTAGAAGCCCGCGCCATCTACGATCCTATCTTGTCATTTCAGCTTTCCAACGGCTTCGACGTGAAACGTCTTATGAAGGC GTATCTGCCGGAAGATGAAGATTCTCACGGCTATGCCACGCTGTTGGAATGGGACAACATTCTCTACGAACCGGAAGACG ACGACGCCGAATGGCCACGCCGCACCGTGGTTCGTGTGGGCGTAGTGCAGCGTCGTATGCGTGCTGCCCGCGACGTGCAA GATCTGCTCAATCAGGTGGAGTTTTTTATTGATGCGCTATCCGATTACCGCGCCGACTTTGCCGTGCTGCCGGAATTCTT TAGCGCGCCGCTCATGGGGCTACGGCCAGAATTGAACTCCGTGGAAGCGGTGCGCTTCCTCGCCAGCTTCACCGAAGAAG TACGCGATGCCTTGGCGGATATGGCCGTGAGCTACAACATCAACATCATTGGCGGCTCCATGCCGGTGATTGAAGATGAC AAGGTCTACAATGTGGCCTACTTGATGCGTCGCGATGGCTCGGTGGAATCCCAGTACAAGATTCACATTACCCCCCACGA ACGCCGTGACTGGGTGATCCAGGGCGGTGACAAATTGCAGGTGTTCGATACCGACGCAGGTAGGGTGGGTATCCTGATTT GTTACGACGTGGAATTCCCTGAGCTGGGCCGGATTCTCGCCGACGAGAAAATGGACATCCTGTTCGTGCCGTTCTGGACC GACACCAAAAACGGCTACCTGCGCGTACGTCACTGTGCCCAGGCCCGCGCCATCGAAAACGAATGCTACGTGGCCATTTC CGGCTCGGTGGGCAACCTGCCCCGGGTGGATGCGGTGGATATCCAGTACGCACAATCGTCGGTATTTTCCCCCAGCGATT TCTACTTTCCCCACGATGCCATCATCAGTGAATCGGTCCCCAATACCGAAATGCTGATGTTTGCCGATGTGGATCTGGAA AAACTGAAGCTGCTGCACCGGGAAGGCTCGGTAACCAACCTGCGCGATCGTCGGGATGATCTTTATAGCTTGGATTGGAA AAAGAAAGACTAA
Upstream 100 bases:
>100_bases CCGTAGACTAGCCTGCTGAAACGGGGATGCGGTGGTGAAGGCAGTAGCGTTTTTTCGCGTTGCGCCGTGGTGCGTGAAGC GTCAACACAAGGAGTTATTC
Downstream 100 bases:
>100_bases ACCCTCAGGGCAGGGCCGCCCGGCCCTGCCTGCACTTCCCGGTCAGAAGTATGCTGTAGGAACGTAGCGTAGCGAACTAA CGCACGTAGTGCGGCCCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MAEETTRLRLRTLTHEDYPALARLMNQVYHDIGGAWPEDTIKTLIRIFQDGQLVIEDNGELVATALTIKVKYDRFSNPHR YEDLITDDKVRSHDNKGDALYGLDVFVDKEYRGYRLGRRLYEARKELCREENLRAILAGGRLPGYTNYADQMPVTEYIEQ VEARAIYDPILSFQLSNGFDVKRLMKAYLPEDEDSHGYATLLEWDNILYEPEDDDAEWPRRTVVRVGVVQRRMRAARDVQ DLLNQVEFFIDALSDYRADFAVLPEFFSAPLMGLRPELNSVEAVRFLASFTEEVRDALADMAVSYNINIIGGSMPVIEDD KVYNVAYLMRRDGSVESQYKIHITPHERRDWVIQGGDKLQVFDTDAGRVGILICYDVEFPELGRILADEKMDILFVPFWT DTKNGYLRVRHCAQARAIENECYVAISGSVGNLPRVDAVDIQYAQSSVFSPSDFYFPHDAIISESVPNTEMLMFADVDLE KLKLLHREGSVTNLRDRRDDLYSLDWKKKD
Sequences:
>Translated_510_residues MAEETTRLRLRTLTHEDYPALARLMNQVYHDIGGAWPEDTIKTLIRIFQDGQLVIEDNGELVATALTIKVKYDRFSNPHR YEDLITDDKVRSHDNKGDALYGLDVFVDKEYRGYRLGRRLYEARKELCREENLRAILAGGRLPGYTNYADQMPVTEYIEQ VEARAIYDPILSFQLSNGFDVKRLMKAYLPEDEDSHGYATLLEWDNILYEPEDDDAEWPRRTVVRVGVVQRRMRAARDVQ DLLNQVEFFIDALSDYRADFAVLPEFFSAPLMGLRPELNSVEAVRFLASFTEEVRDALADMAVSYNINIIGGSMPVIEDD KVYNVAYLMRRDGSVESQYKIHITPHERRDWVIQGGDKLQVFDTDAGRVGILICYDVEFPELGRILADEKMDILFVPFWT DTKNGYLRVRHCAQARAIENECYVAISGSVGNLPRVDAVDIQYAQSSVFSPSDFYFPHDAIISESVPNTEMLMFADVDLE KLKLLHREGSVTNLRDRRDDLYSLDWKKKD >Mature_509_residues AEETTRLRLRTLTHEDYPALARLMNQVYHDIGGAWPEDTIKTLIRIFQDGQLVIEDNGELVATALTIKVKYDRFSNPHRY EDLITDDKVRSHDNKGDALYGLDVFVDKEYRGYRLGRRLYEARKELCREENLRAILAGGRLPGYTNYADQMPVTEYIEQV EARAIYDPILSFQLSNGFDVKRLMKAYLPEDEDSHGYATLLEWDNILYEPEDDDAEWPRRTVVRVGVVQRRMRAARDVQD LLNQVEFFIDALSDYRADFAVLPEFFSAPLMGLRPELNSVEAVRFLASFTEEVRDALADMAVSYNINIIGGSMPVIEDDK VYNVAYLMRRDGSVESQYKIHITPHERRDWVIQGGDKLQVFDTDAGRVGILICYDVEFPELGRILADEKMDILFVPFWTD TKNGYLRVRHCAQARAIENECYVAISGSVGNLPRVDAVDIQYAQSSVFSPSDFYFPHDAIISESVPNTEMLMFADVDLEK LKLLHREGSVTNLRDRRDDLYSLDWKKKD
Specific function: Unknown
COG id: COG0388
COG function: function code R; Predicted amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 N-acetyltransferase domain [H]
Homologues:
Organism=Homo sapiens, GI9910460, Length=303, Percent_Identity=25.7425742574257, Blast_Score=97, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17556280, Length=305, Percent_Identity=25.5737704918033, Blast_Score=72, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6323383, Length=304, Percent_Identity=25.3289473684211, Blast_Score=82, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6322335, Length=307, Percent_Identity=27.0358306188925, Blast_Score=80, Evalue=9e-16, Organism=Drosophila melanogaster, GI21355835, Length=302, Percent_Identity=21.523178807947, Blast_Score=85, Evalue=1e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000182 - InterPro: IPR016181 - InterPro: IPR003010 - InterPro: IPR001110 [H]
Pfam domain/function: PF00583 Acetyltransf_1; PF00795 CN_hydrolase [H]
EC number: NA
Molecular weight: Translated: 58826; Mature: 58695
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: PS00527 RIBOSOMAL_S14 ; PS50263 CN_HYDROLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEETTRLRLRTLTHEDYPALARLMNQVYHDIGGAWPEDTIKTLIRIFQDGQLVIEDNGE CCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCC LVATALTIKVKYDRFSNPHRYEDLITDDKVRSHDNKGDALYGLDVFVDKEYRGYRLGRRL EEEEEEEEEEEECCCCCCCHHHHHCCCCHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHH YEARKELCREENLRAILAGGRLPGYTNYADQMPVTEYIEQVEARAIYDPILSFQLSNGFD HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCC VKRLMKAYLPEDEDSHGYATLLEWDNILYEPEDDDAEWPRRTVVRVGVVQRRMRAARDVQ HHHHHHHHCCCCCCCCCEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DLLNQVEFFIDALSDYRADFAVLPEFFSAPLMGLRPELNSVEAVRFLASFTEEVRDALAD HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH MAVSYNINIIGGSMPVIEDDKVYNVAYLMRRDGSVESQYKIHITPHERRDWVIQGGDKLQ HEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCEEE VFDTDAGRVGILICYDVEFPELGRILADEKMDILFVPFWTDTKNGYLRVRHCAQARAIEN EEECCCCCEEEEEEEECCCHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEHHHHHHHCCC ECYVAISGSVGNLPRVDAVDIQYAQSSVFSPSDFYFPHDAIISESVPNTEMLMFADVDLE CEEEEEECCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCHH KLKLLHREGSVTNLRDRRDDLYSLDWKKKD HHHHHHHCCCCCCHHHHCCCCEECCCCCCC >Mature Secondary Structure AEETTRLRLRTLTHEDYPALARLMNQVYHDIGGAWPEDTIKTLIRIFQDGQLVIEDNGE CCCHHEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCC LVATALTIKVKYDRFSNPHRYEDLITDDKVRSHDNKGDALYGLDVFVDKEYRGYRLGRRL EEEEEEEEEEEECCCCCCCHHHHHCCCCHHHCCCCCCCEEEEEEEEECCCCHHHHHHHHH YEARKELCREENLRAILAGGRLPGYTNYADQMPVTEYIEQVEARAIYDPILSFQLSNGFD HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCC VKRLMKAYLPEDEDSHGYATLLEWDNILYEPEDDDAEWPRRTVVRVGVVQRRMRAARDVQ HHHHHHHHCCCCCCCCCEEEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DLLNQVEFFIDALSDYRADFAVLPEFFSAPLMGLRPELNSVEAVRFLASFTEEVRDALAD HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH MAVSYNINIIGGSMPVIEDDKVYNVAYLMRRDGSVESQYKIHITPHERRDWVIQGGDKLQ HEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCEEEECCCEEE VFDTDAGRVGILICYDVEFPELGRILADEKMDILFVPFWTDTKNGYLRVRHCAQARAIEN EEECCCCCEEEEEEEECCCHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEHHHHHHHCCC ECYVAISGSVGNLPRVDAVDIQYAQSSVFSPSDFYFPHDAIISESVPNTEMLMFADVDLE CEEEEEECCCCCCCCCCEEEHHHHHHCCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCHH KLKLLHREGSVTNLRDRRDDLYSLDWKKKD HHHHHHHCCCCCCHHHHCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969498; 9384377 [H]