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The map label for this gene is nirD [H]

Identifier: 110833948

GI number: 110833948

Start: 1231959

End: 1232303

Strand: Direct

Name: nirD [H]

Synonym: ABO_1087

Alternate gene names: 110833948

Gene position: 1231959-1232303 (Clockwise)

Preceding gene: 110833947

Following gene: 110833949

Centisome position: 39.48

GC content: 57.68

Gene sequence:

>345_bases
ATGAACAATGCAGTAGCGGTTGAATGGAAAACAATCTGCAGCGTCGACGATGTGTTGCCCGGCACCGGAGTGGGAGTACG
CCTGGCCACGGGGCAGGCGGCACTCTTTCGTACTAGGGACGGAAAGTTCTATGCGCTAGACAACATGGACCCGTTTAGCC
ATGCCAACGTGATTAGCCGGGGCCTGCTGGGCTCGCTGGGTGACAAACGGGTGGTTGCCTCACCCCTCTATAAGCAGCAC
TTCGATTTGGAAACCGGGCAGTGCATCGAAGACGACAGCGTCAAGCTTAAGGTCTATCCGGTGCGCGTGGTCGGTGATGT
GATTGAGCTGGCCACCTCGGCCTGA

Upstream 100 bases:

>100_bases
CGCTGAAGCGGATGACAACCTGACCTACGTGCGTGAACGTGGCCAGCGACGTCCCGCCTACGAGCATGAACGTATCGAGC
TGGTTGAGGAGGCGTAAGCC

Downstream 100 bases:

>100_bases
AGCGAATCGAGAGGGTGATGCAGTAATGAAACGACTGGTTGTAGTGGGTAACGGTATGGCGGCTTGCCGCTTACTGGAAG
AGCTGACCCGCCTGGCACCG

Product: nitrite reductase small subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MNNAVAVEWKTICSVDDVLPGTGVGVRLATGQAALFRTRDGKFYALDNMDPFSHANVISRGLLGSLGDKRVVASPLYKQH
FDLETGQCIEDDSVKLKVYPVRVVGDVIELATSA

Sequences:

>Translated_114_residues
MNNAVAVEWKTICSVDDVLPGTGVGVRLATGQAALFRTRDGKFYALDNMDPFSHANVISRGLLGSLGDKRVVASPLYKQH
FDLETGQCIEDDSVKLKVYPVRVVGDVIELATSA
>Mature_114_residues
MNNAVAVEWKTICSVDDVLPGTGVGVRLATGQAALFRTRDGKFYALDNMDPFSHANVISRGLLGSLGDKRVVASPLYKQH
FDLETGQCIEDDSVKLKVYPVRVVGDVIELATSA

Specific function: Required for activity of the reductase [H]

COG id: COG2146

COG function: function code PR; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis nasE [H]

Homologues:

Organism=Escherichia coli, GI1789766, Length=104, Percent_Identity=43.2692307692308, Blast_Score=91, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012748
- InterPro:   IPR017881
- InterPro:   IPR017941 [H]

Pfam domain/function: NA

EC number: =1.7.1.4 [H]

Molecular weight: Translated: 12310; Mature: 12310

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNAVAVEWKTICSVDDVLPGTGVGVRLATGQAALFRTRDGKFYALDNMDPFSHANVISR
CCCEEEEEEHEECCCCCCCCCCCCEEEEECCCEEEEEECCCCEEEECCCCCCHHHHHHHH
GLLGSLGDKRVVASPLYKQHFDLETGQCIEDDSVKLKVYPVRVVGDVIELATSA
HHHCCCCCCCEEECCHHHHHCCCCCCCEECCCCEEEEEEEEHHHHHHHHHHCCC
>Mature Secondary Structure
MNNAVAVEWKTICSVDDVLPGTGVGVRLATGQAALFRTRDGKFYALDNMDPFSHANVISR
CCCEEEEEEHEECCCCCCCCCCCCEEEEECCCEEEEEECCCCEEEECCCCCCHHHHHHHH
GLLGSLGDKRVVASPLYKQHFDLETGQCIEDDSVKLKVYPVRVVGDVIELATSA
HHHCCCCCCCEEECCHHHHHCCCCCCCEECCCCEEEEEEEEHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]