Click here to switch to the map view.

The map label for this gene is yfjD [C]

Identifier: 110833883

GI number: 110833883

Start: 1159433

End: 1160458

Strand: Direct

Name: yfjD [C]

Synonym: ABO_1022

Alternate gene names: 110833883

Gene position: 1159433-1160458 (Clockwise)

Preceding gene: 110833882

Following gene: 110833884

Centisome position: 37.16

GC content: 52.63

Gene sequence:

>1026_bases
GTGACGTTACTGATTATCTTCGCCACCATCTCCATTGGCTTTTCCTTTGTGTGCTCCGTGCTGGAAGCTGCGTTGCTGTC
TATTACTCCAAGCTTTATTGCTGGCCTGCGTGACACTCGCCCAGCACTGTATAAAAGTCTGCGCGCCTTTAAGGATGATA
TCGACAAACCGCTGTCGGCGATTCTCACCCTGAACACGGTGGCGCATACGGTGGGTGCCACGGGGGTAGGTGCCCAGGTG
GCGGTGGTATTCGGGGAAGCGTGGCTGGGGGCTGCGTCCGGCATCATGACGCTGGCAATCTTGATCTTTTCCGAAATTAT
CCCGAAAACCATTGGCGCTAAATACTGGCGCTCGTTGGCACCGGCTCTACCGCCTACACTCAAGGTCATTATGGTGTCGT
TACTTCCCTTCGTTTGGTTATCGAAATTGATTACCAGCCGAATCGGTGGCAACGAACACGATGTGGATGTGCGTGCAGAA
ATTCGCGCACTGGCAGACATGGGTGAGGATCAGGGGGCACTGGATGATGACGAACATCGAGTGATCCATAATATTCTGCG
TTTGCACGATATTCCTGTGGGCGCCATCATGACGCCGCGTACGGTATGCCGCACGGTGTCTCCGACCATGACAGTGGGTG
AATTTCGCGAACGTGAGAAAGGGCAGCCCTTCTCTCGTTACCCAGTGATGAGTGACAGCGGTGAAGCGAAAGGGTATATC
CATAAGTCCGATTTGCTCGACAGCGACATGGAAAAGACCATGCAAACGTTGGCTCGGCAAGTGTCCATGGTACATACCAC
GCTGAGTATCCAAGAGTTGTTCAGTGTGATGTTGACGCAACGTCAGCATATGGCTGTGGTTTATGATGAGCACGGCACTT
GGGTGGGTCTGATCACCCTGGAAGATATTTTAGAAAGCATCTTGGGCCGTGAAATTATGGATGAAACTGATAACGTGGCC
GACTTGCGTTTGTATGCGCGCCAGCGTTGGAACCGGCGGCTGAAAAAGCAGGATAAACCGCAGTAA

Upstream 100 bases:

>100_bases
ACGACAGGTGCTAGCGGACTTCGCGGCGCATTACATACCCTAATAACCCTGATGTGCGCGGCTCAGTTGAACCGCGTACT
GGCATAAGGAGCATGCATCG

Downstream 100 bases:

>100_bases
GCCATTGTGCGCCATGCGCCAAGAACGGAGAGATCAATATGACCCGCATCTACCAAGACAATAGCGAAACCATCGGCAAC
ACTCCTTTGGTAAAGATCAA

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MTLLIIFATISIGFSFVCSVLEAALLSITPSFIAGLRDTRPALYKSLRAFKDDIDKPLSAILTLNTVAHTVGATGVGAQV
AVVFGEAWLGAASGIMTLAILIFSEIIPKTIGAKYWRSLAPALPPTLKVIMVSLLPFVWLSKLITSRIGGNEHDVDVRAE
IRALADMGEDQGALDDDEHRVIHNILRLHDIPVGAIMTPRTVCRTVSPTMTVGEFREREKGQPFSRYPVMSDSGEAKGYI
HKSDLLDSDMEKTMQTLARQVSMVHTTLSIQELFSVMLTQRQHMAVVYDEHGTWVGLITLEDILESILGREIMDETDNVA
DLRLYARQRWNRRLKKQDKPQ

Sequences:

>Translated_341_residues
MTLLIIFATISIGFSFVCSVLEAALLSITPSFIAGLRDTRPALYKSLRAFKDDIDKPLSAILTLNTVAHTVGATGVGAQV
AVVFGEAWLGAASGIMTLAILIFSEIIPKTIGAKYWRSLAPALPPTLKVIMVSLLPFVWLSKLITSRIGGNEHDVDVRAE
IRALADMGEDQGALDDDEHRVIHNILRLHDIPVGAIMTPRTVCRTVSPTMTVGEFREREKGQPFSRYPVMSDSGEAKGYI
HKSDLLDSDMEKTMQTLARQVSMVHTTLSIQELFSVMLTQRQHMAVVYDEHGTWVGLITLEDILESILGREIMDETDNVA
DLRLYARQRWNRRLKKQDKPQ
>Mature_340_residues
TLLIIFATISIGFSFVCSVLEAALLSITPSFIAGLRDTRPALYKSLRAFKDDIDKPLSAILTLNTVAHTVGATGVGAQVA
VVFGEAWLGAASGIMTLAILIFSEIIPKTIGAKYWRSLAPALPPTLKVIMVSLLPFVWLSKLITSRIGGNEHDVDVRAEI
RALADMGEDQGALDDDEHRVIHNILRLHDIPVGAIMTPRTVCRTVSPTMTVGEFREREKGQPFSRYPVMSDSGEAKGYIH
KSDLLDSDMEKTMQTLARQVSMVHTTLSIQELFSVMLTQRQHMAVVYDEHGTWVGLITLEDILESILGREIMDETDNVAD
LRLYARQRWNRRLKKQDKPQ

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=236, Percent_Identity=26.6949152542373, Blast_Score=82, Evalue=8e-16,
Organism=Escherichia coli, GI145693175, Length=273, Percent_Identity=25.6410256410256, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1786879, Length=157, Percent_Identity=32.484076433121, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790664, Length=229, Percent_Identity=23.5807860262009, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324512, Length=267, Percent_Identity=24.7191011235955, Blast_Score=66, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR002550 [H]

Pfam domain/function: PF00571 CBS; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 37885; Mature: 37753

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLIIFATISIGFSFVCSVLEAALLSITPSFIAGLRDTRPALYKSLRAFKDDIDKPLSA
CEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
ILTLNTVAHTVGATGVGAQVAVVFGEAWLGAASGIMTLAILIFSEIIPKTIGAKYWRSLA
HHHHHHHHHHHCCCCCCCEEHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PALPPTLKVIMVSLLPFVWLSKLITSRIGGNEHDVDVRAEIRALADMGEDQGALDDDEHR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH
VIHNILRLHDIPVGAIMTPRTVCRTVSPTMTVGEFREREKGQPFSRYPVMSDSGEAKGYI
HHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
HKSDLLDSDMEKTMQTLARQVSMVHTTLSIQELFSVMLTQRQHMAVVYDEHGTWVGLITL
EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEH
EDILESILGREIMDETDNVADLRLYARQRWNRRLKKQDKPQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TLLIIFATISIGFSFVCSVLEAALLSITPSFIAGLRDTRPALYKSLRAFKDDIDKPLSA
EEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
ILTLNTVAHTVGATGVGAQVAVVFGEAWLGAASGIMTLAILIFSEIIPKTIGAKYWRSLA
HHHHHHHHHHHCCCCCCCEEHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PALPPTLKVIMVSLLPFVWLSKLITSRIGGNEHDVDVRAEIRALADMGEDQGALDDDEHR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHH
VIHNILRLHDIPVGAIMTPRTVCRTVSPTMTVGEFREREKGQPFSRYPVMSDSGEAKGYI
HHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCE
HKSDLLDSDMEKTMQTLARQVSMVHTTLSIQELFSVMLTQRQHMAVVYDEHGTWVGLITL
EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEH
EDILESILGREIMDETDNVADLRLYARQRWNRRLKKQDKPQ
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]