| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110833871
Identifier: 110833871
GI number: 110833871
Start: 1147330
End: 1147980
Strand: Direct
Name: 110833871
Synonym: ABO_1010
Alternate gene names: NA
Gene position: 1147330-1147980 (Clockwise)
Preceding gene: 110833867
Following gene: 110833873
Centisome position: 36.77
GC content: 52.53
Gene sequence:
>651_bases ATGGAGCAGGCCAATAATAATGATTTCGGCCAGCAACGGCGTCGCCAGCTGTTAGCGGGCGTGCCGTTTTTTAATGAAAT TAATCGTGATGATCAGAACGAATTTTCCCGGCTTGAACAGACCACCCGTCTTTGGGTTGCCGCTTCGGGAGAAAGCGTAA TTCGAGCCGGTGAGGTGGATTCCACTCTGTACTTTTTGTTGAGGGGGCAGCTGGAAGTGTTATCGGAGAATCCCCAGGGT GCGCCGTTGTATTATGTATCACCGGGTGAGGTGTTTGGCTCCTTGTCTATGCTGCTGGGGACTCCGCGTAGTGCGACTAT TAAGGTGACAGATAATGCCCGCGAAGCGGTATTGGCAAGCTTGGATTTCAATGATTTTAATGATGATGGCAGTGCCTATT CGCTGGCAACCCGGCTGGCTTTTTTCCATATGATTGTGCATCACATTCGCTGGACTTTGGAGGTGAAGCGAATGCAGGCA CCGACCCATGAACTGGTTCAGTCTATGCGCAAGTTGCCAGTGTTTTATGGCGAGAAAAACAGTCCGCAAGAGCTGGCTGC ATTGAAAGCGCAGGCGCAAGGGCTGGCAGAATTGCTGTGTCGCTGGAACGAGGAAGGCCAGGCCAGCACCGGGGCTCTGC AGCTGACCTGA
Upstream 100 bases:
>100_bases AGTTCACCCCTCTTTTTTTCCTTGCCGTTGCTCTGTTGTGGAGGTCGCTCTAGCATGTGTGTAGTTGATTACAATGCCAT CAGACCAGTGGGGGTAGTGG
Downstream 100 bases:
>100_bases GGGGCTCTGCTTCGGGGAATACGCGCTGCGCTATTTCCCCGTTGCTAGTGCTGGTCTACCTTAACGGCCAGCACGTCGCA GTGCGCACCGGGGACCAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 216; Mature: 216
Protein sequence:
>216_residues MEQANNNDFGQQRRRQLLAGVPFFNEINRDDQNEFSRLEQTTRLWVAASGESVIRAGEVDSTLYFLLRGQLEVLSENPQG APLYYVSPGEVFGSLSMLLGTPRSATIKVTDNAREAVLASLDFNDFNDDGSAYSLATRLAFFHMIVHHIRWTLEVKRMQA PTHELVQSMRKLPVFYGEKNSPQELAALKAQAQGLAELLCRWNEEGQASTGALQLT
Sequences:
>Translated_216_residues MEQANNNDFGQQRRRQLLAGVPFFNEINRDDQNEFSRLEQTTRLWVAASGESVIRAGEVDSTLYFLLRGQLEVLSENPQG APLYYVSPGEVFGSLSMLLGTPRSATIKVTDNAREAVLASLDFNDFNDDGSAYSLATRLAFFHMIVHHIRWTLEVKRMQA PTHELVQSMRKLPVFYGEKNSPQELAALKAQAQGLAELLCRWNEEGQASTGALQLT >Mature_216_residues MEQANNNDFGQQRRRQLLAGVPFFNEINRDDQNEFSRLEQTTRLWVAASGESVIRAGEVDSTLYFLLRGQLEVLSENPQG APLYYVSPGEVFGSLSMLLGTPRSATIKVTDNAREAVLASLDFNDFNDDGSAYSLATRLAFFHMIVHHIRWTLEVKRMQA PTHELVQSMRKLPVFYGEKNSPQELAALKAQAQGLAELLCRWNEEGQASTGALQLT
Specific function: Unknown
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24222; Mature: 24222
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: PS50042 CNMP_BINDING_3 ; PS00300 SRP54
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQANNNDFGQQRRRQLLAGVPFFNEINRDDQNEFSRLEQTTRLWVAASGESVIRAGEVD CCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHEEEEEECCCCEEECCCCC STLYFLLRGQLEVLSENPQGAPLYYVSPGEVFGSLSMLLGTPRSATIKVTDNAREAVLAS HHHHHHHHHHHHEECCCCCCCEEEEECHHHHHHHHHHHHCCCCCCEEEEECCCHHHEEEE LDFNDFNDDGSAYSLATRLAFFHMIVHHIRWTLEVKRMQAPTHELVQSMRKLPVFYGEKN CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCC SPQELAALKAQAQGLAELLCRWNEEGQASTGALQLT CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC >Mature Secondary Structure MEQANNNDFGQQRRRQLLAGVPFFNEINRDDQNEFSRLEQTTRLWVAASGESVIRAGEVD CCCCCCCCHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHEEEEEECCCCEEECCCCC STLYFLLRGQLEVLSENPQGAPLYYVSPGEVFGSLSMLLGTPRSATIKVTDNAREAVLAS HHHHHHHHHHHHEECCCCCCCEEEEECHHHHHHHHHHHHCCCCCCEEEEECCCHHHEEEE LDFNDFNDDGSAYSLATRLAFFHMIVHHIRWTLEVKRMQAPTHELVQSMRKLPVFYGEKN CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCEEECCCC SPQELAALKAQAQGLAELLCRWNEEGQASTGALQLT CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA