| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is ypjH [H]
Identifier: 110833781
GI number: 110833781
Start: 1028796
End: 1029953
Strand: Direct
Name: ypjH [H]
Synonym: ABO_0920
Alternate gene names: 110833781
Gene position: 1028796-1029953 (Clockwise)
Preceding gene: 110833780
Following gene: 110833782
Centisome position: 32.97
GC content: 45.77
Gene sequence:
>1158_bases GTGGCCTGGCTAAAAGCGGATCTGGGAATGGATAAAATACGCGTACTTCATTGTTTGGAGACAATTGGGTCTGGTGGGGT TGAGCAAACACGGCTTTCACTTGTTAAGTGCCTTGATTCTTCTAGGTATGAACAGAGGATTATCTGTACTAAAGCAATAG GTGGGCTGCCTGAACTTTTTCAACAAGAGGGTTGTGAAATAGTTGAGGTTGGCGAGTTTGAAAAGGTGTTTGACTTTGAG AGGTATCGGCGTGCTGCTGCAGCGGTGAAGGACTTTAAGCCCCATATTATTCATGGGGCAGTTTTCGAGGGGGTCAACAT GGCCGCAATCGTTGGCAGACGGTGCAGTGTTCCTGTAATTATTGGTGAAGAGACTAGCGATCCACAAAATAGAAGCTGGA AGGGAAGCTTGCTTTATCGATTCCTGGTTTTTTTTATTCATCATATGGTTGCAGTCTCCCCCGCAGTTGAGCGCTACCTG AGAAATAAGATTTTTGTTCCCAAGTATAAAGTCACCATGGTTGCCAATGGGGTTGCAGAAAAGCCCGCCCCTGCAAGCGA GGAGGTTGTTTGCCTAAGGAAGGAGTTGGGAATAAGTGACTCTGACTTTGTGATCGGCACTGTTGGACGACTTTTTGACG AGCATAAAAGGGTAAGTGATTTACTTAGAGCATTCGAGATGCTTTTGGAGCATTCGGCCAACGCGAAGTTGTTGATCGTC GGCACAGGGCCTGACGAAGATATGCTTAAAACGATGGCGAAGAATCTGGGTGTATTAAACAGGGTGATATTCGCAGGTTA TCAAGTCAATACTCGAATTTACTATGAGCTAATGGATGTTTTTTGTTTGCCATCAGCTTTTGAAGCATTCGGGTTGGTTC TTGTGGAGGCAATGTATGCTGGGGTTCCTATTGTTGCTACGAGGACGGGCGGGATTCCAAAGGTGGTGGTTGAGAACGAA ACGGCACTTTTGAGCCCTCCGTTTGACCCCAAAGTCTTGTCTCACAATATTTTAAAACTATACACGTCATCGGAATTAAG AGATAAATTTTCTGTTGCTGGCCTGGCGAGGGCCAGAAGGGAGTTTAGCGAAGACCGATATGTGTCTGATATAGACACCC TCTACACTCGTCTTCTTTCTGAACGCGGTTTGATATGA
Upstream 100 bases:
>100_bases CAACGAGAAAATTTAACTGAGATTGGCGAATGTGCTAAAGAGTCCGTTAGAGGCAGATTTGAGCCTGAGAATTATATGGT AGAGCTGGACAATCTTTATA
Downstream 100 bases:
>100_bases ATGTTTTGTTCGTGACCTGGGACGGCCCTCAAGTCTCTTATCTTGAAAGCCTGTTTTTGCCTATTTTTAAGCAGCTTCAA CATTTCGGTTTGCACTTTCA
Product: group 1 glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MAWLKADLGMDKIRVLHCLETIGSGGVEQTRLSLVKCLDSSRYEQRIICTKAIGGLPELFQQEGCEIVEVGEFEKVFDFE RYRRAAAAVKDFKPHIIHGAVFEGVNMAAIVGRRCSVPVIIGEETSDPQNRSWKGSLLYRFLVFFIHHMVAVSPAVERYL RNKIFVPKYKVTMVANGVAEKPAPASEEVVCLRKELGISDSDFVIGTVGRLFDEHKRVSDLLRAFEMLLEHSANAKLLIV GTGPDEDMLKTMAKNLGVLNRVIFAGYQVNTRIYYELMDVFCLPSAFEAFGLVLVEAMYAGVPIVATRTGGIPKVVVENE TALLSPPFDPKVLSHNILKLYTSSELRDKFSVAGLARARREFSEDRYVSDIDTLYTRLLSERGLI
Sequences:
>Translated_385_residues MAWLKADLGMDKIRVLHCLETIGSGGVEQTRLSLVKCLDSSRYEQRIICTKAIGGLPELFQQEGCEIVEVGEFEKVFDFE RYRRAAAAVKDFKPHIIHGAVFEGVNMAAIVGRRCSVPVIIGEETSDPQNRSWKGSLLYRFLVFFIHHMVAVSPAVERYL RNKIFVPKYKVTMVANGVAEKPAPASEEVVCLRKELGISDSDFVIGTVGRLFDEHKRVSDLLRAFEMLLEHSANAKLLIV GTGPDEDMLKTMAKNLGVLNRVIFAGYQVNTRIYYELMDVFCLPSAFEAFGLVLVEAMYAGVPIVATRTGGIPKVVVENE TALLSPPFDPKVLSHNILKLYTSSELRDKFSVAGLARARREFSEDRYVSDIDTLYTRLLSERGLI >Mature_384_residues AWLKADLGMDKIRVLHCLETIGSGGVEQTRLSLVKCLDSSRYEQRIICTKAIGGLPELFQQEGCEIVEVGEFEKVFDFER YRRAAAAVKDFKPHIIHGAVFEGVNMAAIVGRRCSVPVIIGEETSDPQNRSWKGSLLYRFLVFFIHHMVAVSPAVERYLR NKIFVPKYKVTMVANGVAEKPAPASEEVVCLRKELGISDSDFVIGTVGRLFDEHKRVSDLLRAFEMLLEHSANAKLLIVG TGPDEDMLKTMAKNLGVLNRVIFAGYQVNTRIYYELMDVFCLPSAFEAFGLVLVEAMYAGVPIVATRTGGIPKVVVENET ALLSPPFDPKVLSHNILKLYTSSELRDKFSVAGLARARREFSEDRYVSDIDTLYTRLLSERGLI
Specific function: Adds A Galactose Goup To A Glucose Group Of Lps. [C]
COG id: COG0438
COG function: function code M; Glycosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001296 - InterPro: IPR016040 [H]
Pfam domain/function: PF00534 Glycos_transf_1 [H]
EC number: 2.4.1.- [C]
Molecular weight: Translated: 43060; Mature: 42928
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWLKADLGMDKIRVLHCLETIGSGGVEQTRLSLVKCLDSSRYEQRIICTKAIGGLPELF CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH QQEGCEIVEVGEFEKVFDFERYRRAAAAVKDFKPHIIHGAVFEGVNMAAIVGRRCSVPVI HHCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHCCCCHHHHHCCCCCCCEE IGEETSDPQNRSWKGSLLYRFLVFFIHHMVAVSPAVERYLRNKIFVPKYKVTMVANGVAE ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC KPAPASEEVVCLRKELGISDSDFVIGTVGRLFDEHKRVSDLLRAFEMLLEHSANAKLLIV CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE GTGPDEDMLKTMAKNLGVLNRVIFAGYQVNTRIYYELMDVFCLPSAFEAFGLVLVEAMYA ECCCCHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC GVPIVATRTGGIPKVVVENETALLSPPFDPKVLSHNILKLYTSSELRDKFSVAGLARARR CCCEEEECCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH EFSEDRYVSDIDTLYTRLLSERGLI HHHCCHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AWLKADLGMDKIRVLHCLETIGSGGVEQTRLSLVKCLDSSRYEQRIICTKAIGGLPELF CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHH QQEGCEIVEVGEFEKVFDFERYRRAAAAVKDFKPHIIHGAVFEGVNMAAIVGRRCSVPVI HHCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCHHEEHHHHCCCCHHHHHCCCCCCCEE IGEETSDPQNRSWKGSLLYRFLVFFIHHMVAVSPAVERYLRNKIFVPKYKVTMVANGVAE ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCC KPAPASEEVVCLRKELGISDSDFVIGTVGRLFDEHKRVSDLLRAFEMLLEHSANAKLLIV CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE GTGPDEDMLKTMAKNLGVLNRVIFAGYQVNTRIYYELMDVFCLPSAFEAFGLVLVEAMYA ECCCCHHHHHHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC GVPIVATRTGGIPKVVVENETALLSPPFDPKVLSHNILKLYTSSELRDKFSVAGLARARR CCCEEEECCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH EFSEDRYVSDIDTLYTRLLSERGLI HHHCCHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Glycosyltransferases; Hexosyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]