| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110833751
Identifier: 110833751
GI number: 110833751
Start: 987606
End: 988484
Strand: Direct
Name: 110833751
Synonym: ABO_0890
Alternate gene names: NA
Gene position: 987606-988484 (Clockwise)
Preceding gene: 110833750
Following gene: 110833752
Centisome position: 31.65
GC content: 55.29
Gene sequence:
>879_bases GTGAGCTCAACGAGCTACGGTTACAATGTCCGCACTGAGCGGCTGCGGGTCGTTGGTTTACTCGAATTATTTGCCTTCCT GATTCTCATCGCGGTGGTGTGCTGGATGGTCTTCCCACGGGACCTATCCTCGTCGTTGCGCAGCGCTCGTCTGGATGCGG TTACGTTTAGTTATATGCAGGCATGGCTGAAGGCTAAACCCGACGACCACGAGTTACGGCTGCTGATGGCTCGCGAATTG ATTCTGCAAGGCGATTTTGTGGAGGCAGATAATCAACTGAGCTATGTGGCACGTGTCAGCAATGGCCGTTATGACAGCCA GATCGCTTGGCTGGAATTACGTCGCGAATTTACCCGCCTGATGGCCATCACACCGGACAACCGTTTTGGAACCATGTTGC AGCATGACACCCTAGCGCAGTTGCGCAGCATTGACTGGGGTGCGCTGAATAATGAAAAGCGCATGGCGTTTGCAGATATG GCCCTGGCCCTGGGGGACGTAGACCAGGCGGTACAGGCTTTCACTCGATTGGCTGACAATGCGGCTAACCCCAGCCGCTG GTATGTGAAATCAGCCAAAGTGCTGCTGGCCCATGGCCGTTACTCGGAATCGGCGGACGCCTATATTGCCGCTATGGATT CACGAGGCAATTATCAGGTGCGCAAGCGCTATTTTCTGGCTGCGCTGGATGCTTTGCAGGCAGGGAGCCTGCATCGCAAG GCCATGCGCTTGGCCGGCGCCCGTGAACGGTCGTTTTATAATGACAAAGACGTTTTGTACCGGTTAATGACCTTGGCTCA GGCTGGCGGCAATATGGCAGCGGCAGAACATTATGCGGTGTTGCTGTTAAGGCTGGCGGATATCGAGGAGCCCGGATGA
Upstream 100 bases:
>100_bases ACCTTGGCCAACGTCGAAGGCTGCACCCTGCGTCACCAAGGTAACATTATTAAACCGATTGGCCGTCACGGTCGATTTAA TCGCTACAGGAGTGCGGCAC
Downstream 100 bases:
>100_bases AGTTCCGTCTGTTGCTTATGGTTGTTCTTGCTTCGGTATTGGCCGGCGCATGGACAGCCCATGCGGCGGATCCAGAACCC TATGTGGAACGCTATTACGA
Product: hypothetical protein
Products: NA
Alternate protein names: TPR Repeat Containing Protein
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MSSTSYGYNVRTERLRVVGLLELFAFLILIAVVCWMVFPRDLSSSLRSARLDAVTFSYMQAWLKAKPDDHELRLLMAREL ILQGDFVEADNQLSYVARVSNGRYDSQIAWLELRREFTRLMAITPDNRFGTMLQHDTLAQLRSIDWGALNNEKRMAFADM ALALGDVDQAVQAFTRLADNAANPSRWYVKSAKVLLAHGRYSESADAYIAAMDSRGNYQVRKRYFLAALDALQAGSLHRK AMRLAGARERSFYNDKDVLYRLMTLAQAGGNMAAAEHYAVLLLRLADIEEPG
Sequences:
>Translated_292_residues MSSTSYGYNVRTERLRVVGLLELFAFLILIAVVCWMVFPRDLSSSLRSARLDAVTFSYMQAWLKAKPDDHELRLLMAREL ILQGDFVEADNQLSYVARVSNGRYDSQIAWLELRREFTRLMAITPDNRFGTMLQHDTLAQLRSIDWGALNNEKRMAFADM ALALGDVDQAVQAFTRLADNAANPSRWYVKSAKVLLAHGRYSESADAYIAAMDSRGNYQVRKRYFLAALDALQAGSLHRK AMRLAGARERSFYNDKDVLYRLMTLAQAGGNMAAAEHYAVLLLRLADIEEPG >Mature_291_residues SSTSYGYNVRTERLRVVGLLELFAFLILIAVVCWMVFPRDLSSSLRSARLDAVTFSYMQAWLKAKPDDHELRLLMARELI LQGDFVEADNQLSYVARVSNGRYDSQIAWLELRREFTRLMAITPDNRFGTMLQHDTLAQLRSIDWGALNNEKRMAFADMA LALGDVDQAVQAFTRLADNAANPSRWYVKSAKVLLAHGRYSESADAYIAAMDSRGNYQVRKRYFLAALDALQAGSLHRKA MRLAGARERSFYNDKDVLYRLMTLAQAGGNMAAAEHYAVLLLRLADIEEPG
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33047; Mature: 32916
Theoretical pI: Translated: 9.13; Mature: 9.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTSYGYNVRTERLRVVGLLELFAFLILIAVVCWMVFPRDLSSSLRSARLDAVTFSYMQ CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH AWLKAKPDDHELRLLMARELILQGDFVEADNQLSYVARVSNGRYDSQIAWLELRREFTRL HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH MAITPDNRFGTMLQHDTLAQLRSIDWGALNNEKRMAFADMALALGDVDQAVQAFTRLADN EEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHC AANPSRWYVKSAKVLLAHGRYSESADAYIAAMDSRGNYQVRKRYFLAALDALQAGSLHRK CCCCCHHHHHHHHEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHH AMRLAGARERSFYNDKDVLYRLMTLAQAGGNMAAAEHYAVLLLRLADIEEPG HHHHHCHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SSTSYGYNVRTERLRVVGLLELFAFLILIAVVCWMVFPRDLSSSLRSARLDAVTFSYMQ CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH AWLKAKPDDHELRLLMARELILQGDFVEADNQLSYVARVSNGRYDSQIAWLELRREFTRL HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH MAITPDNRFGTMLQHDTLAQLRSIDWGALNNEKRMAFADMALALGDVDQAVQAFTRLADN EEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHC AANPSRWYVKSAKVLLAHGRYSESADAYIAAMDSRGNYQVRKRYFLAALDALQAGSLHRK CCCCCHHHHHHHHEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHH AMRLAGARERSFYNDKDVLYRLMTLAQAGGNMAAAEHYAVLLLRLADIEEPG HHHHHCHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA