| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110833752
Identifier: 110833752
GI number: 110833752
Start: 988481
End: 991261
Strand: Direct
Name: 110833752
Synonym: ABO_0891
Alternate gene names: NA
Gene position: 988481-991261 (Clockwise)
Preceding gene: 110833751
Following gene: 110833753
Centisome position: 31.68
GC content: 55.77
Gene sequence:
>2781_bases ATGAAGTTCCGTCTGTTGCTTATGGTTGTTCTTGCTTCGGTATTGGCCGGCGCATGGACAGCCCATGCGGCGGATCCAGA ACCCTATGTGGAACGCTATTACGATCGCAGCTATCGGGTGTTTATGGCGTCGGGAAATTTACCCCGTGCCCGGCAAGTGA TTGAAAATGCGCTCTACTGGCGTTCCGACGATGAGCGCTGGTGGCGTCGTTTGGCTGAAGTATCCCGTTGGTTGGGCGAC CCGGAAACCGCATTGAAGGCCTGGCGTCAGGTGGCGGAGTTGAGTAATGACCCGCAGGCGTGGAAGCACGTACTGGAGTT AGCGCCACTGACCTATAACAACCGCCTTGCCCTGCGGGCTCACAAGGCGCTATTGAGCGTGTCCCCTTACGATGCGGGCA TCATTGCCACCATCGGTCGGCAATACGAGTTGTTGGGTCAGCCTGAGGCAGGGCTGCGCTTCTTCGAACAGTGGCGTCGT AGTTATCCCAGCAAAGCGGTGCTAAGAGAAATGCAACGCTTGGCTCTGAACCAGGGAGAAGATTTGCTGGCGGCAGGTTA TTCCCGGGAATACATGGATCGTTTTGGTCCTGAGCCGTTGATGGCAGAACAGGCCGCAGATCTGTACTGGCTAAATGGTC AACGCGAAAAAGCGCTGTTAGACCTAAATCGTGATGCTAACCAGTTGCCTTATATACCCGCATTGTCCCGTCGTATTGCG GTGATGGCCGGGGAGTTGGGGGAGTGGGATCTGGCACTGTCCCGTTACCAGGAGCTGGTGGACAATGAAGACGATCAGAT AGACGACCTGTATAACTATATAACGCTGTCCCGTTATTACCAGCCGGAGCGGCTAGCATTGCTGATGGGCCGGGCCTGGC GCAAGAACGGTGACCCGCAATTGGCACTTGGCGCATTGTACCAGCTGCAGTCTCGCGGCGATGATGCCGCCATTGATGCC TTTCTTAAGGGGCTGAGCGCGGAACAACGACAACGGCTTGAACAAACCCCGGAATTTTTGCGCTTCTATGCCAACCTGCA ATTGCATCGCGGGGATGCAGACGCGGCGCAGCGGTGGCTTAATAAAGCCTTGGTTTTAAATTCCGAGGACAGAGAAACCC GCATTAGCTGGATGTGGCTGCTCATCGCCACAGGCCAAGATACCGCGCTGCAACAGGCTCTGGTGAATTGGGAAGACTCG GCTCGCAGTGACCGCCGCTATTGGAACGTGCTGGCAGCTTCACAAATGGCCTTGGGTAATGCGGAGCAGTCCCTGCGCTA TGAAATTGAACTACTGAAAACTGCCCGCGATAACTGGGAGAGGCAGTGGTATTACTCCCAGGCGTTGATTGCTTCTGGGC GAAACGGGCAAGCTTGGCCGGTAATGCGTCGCCTAAAAGAGCAGCTTCCGTTTACGGTCGAACCGCAGCAACAGGCCACC TATAGGGACATGAAGTTGACCCTAAGCCTGTTATTTGATGATGGCGACACCACCCTCAAACTGGCCCAAGCGCAAATAGA CGGCATGGAAGACGTGCCCGCCGCTCATGCTGAATGGCTAGCGCAGTGGGCCATTGGTCAGTCGGAACCTGGCTTGGCTC AGAGCTGGTATTTACGTAAAAAAATAGCACAGCAGGGCCCGCTTAAGGCTGGATCAGCGCTGGCCTATGCCTTGGTGCAG GGTGATCTGGATTCGGTAGCCAGAACGCGTGAGCAGTACTTGGGCCAGCTTAGCCTGTCCGAACAGCTGGAAGCCCACGT GCGGTTGGATGAACCGCGCCAGGCCGCTAATACTTTCATGGCCATTCAGGCCGGAGCGCCAGAGTTGGCAGGCAGTAATA ATCTGCAGGAAAGCCTGCTGTTGCCTACGGCGCTTTCCTCCCAGTTTCATCTTGAGCAGCGCCGTTTGGGTGCGCTGGAT ATTCAGGACCTGCAGTTTGTTCAGTACCACCCGATCAGTGACTTCACGCAGTTGTCGGTGGAGGCTCGTCAGCGCAATTT CAGTAGTAATGACGATGAATTATTGCAGATCAGTGATGATGAGCAGCGCCTCTCGGTGGCGTTAGCCTACCAGCGCGAAC GGTTCCGCAGTCGCCTGAAATTGGGCCAGCGCAATCTGTTGAACAATAGTGAAACCATGGCGGACTTGGAGCTGGGGGCG AACTGGACGCAGTATTGGTCCGGTAGCCTGAATTACCAATGGCGAACGCCGGCGGATGAATCGTCCCTGTTGATTCTCGG TGCGTCACGCACGGGTAGCCAGTGGTTGTTGAATTGGAGGCCATCATCCACCTGGCAAAGCAGTGTGGATTGGGCCAACT ATGACTACCATGATCTCAATGAGAGCGATCTGGGCAGTGGCAGTATCATCAATGCTCAAAGCACCTGGCGCCCCTGGTTA TCACGCTTTTCCCCCGGCGTACGGGTGAGGCACACCCGTGCGGACTTCACCGCTGGCGGCGACAGCATGGCGCAAGTGCG TGCGCTGCTACCCCCGGGGGCCCAGACGTTGCCGCTACCGCAAGACTATCACGAGTCGGAAATAGTACTGTTGTTGGGCC AGCCTGATGTCCATATTCGTGCGCACCGATTACAGGGTTGGGGAGAAATTGGCTACAGCGAGAACAGTTTGTCTGGGGCG GGTTTTACCGGCCGCTTCGGGGTCGAAGGCCCTTTGATCGGGCGTGATGAATGGAAGATTTACGCGGAGCAACAGCTCAA TAGCGGTGGCAGTGATGAAGACAGCTACCGCTTTGGGCTGCAATATAGAATTTATTATTAG
Upstream 100 bases:
>100_bases TGTACCGGTTAATGACCTTGGCTCAGGCTGGCGGCAATATGGCAGCGGCAGAACATTATGCGGTGTTGCTGTTAAGGCTG GCGGATATCGAGGAGCCCGG
Downstream 100 bases:
>100_bases GAGTGAATCCAATGAGAGTGAGCATTCCGCTACTGGGTACCTTGCTGCTGGCTGTCGTGCTGGCCGGTTGTACTCATGTT CGCAGCAGTCAGAATGTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Peptide Protein TPR Domain-Containing; TPR Repeat Containing Protein; Signal Peptide Protein; Tetratricopeptide Repeat Domain Protein
Number of amino acids: Translated: 926; Mature: 926
Protein sequence:
>926_residues MKFRLLLMVVLASVLAGAWTAHAADPEPYVERYYDRSYRVFMASGNLPRARQVIENALYWRSDDERWWRRLAEVSRWLGD PETALKAWRQVAELSNDPQAWKHVLELAPLTYNNRLALRAHKALLSVSPYDAGIIATIGRQYELLGQPEAGLRFFEQWRR SYPSKAVLREMQRLALNQGEDLLAAGYSREYMDRFGPEPLMAEQAADLYWLNGQREKALLDLNRDANQLPYIPALSRRIA VMAGELGEWDLALSRYQELVDNEDDQIDDLYNYITLSRYYQPERLALLMGRAWRKNGDPQLALGALYQLQSRGDDAAIDA FLKGLSAEQRQRLEQTPEFLRFYANLQLHRGDADAAQRWLNKALVLNSEDRETRISWMWLLIATGQDTALQQALVNWEDS ARSDRRYWNVLAASQMALGNAEQSLRYEIELLKTARDNWERQWYYSQALIASGRNGQAWPVMRRLKEQLPFTVEPQQQAT YRDMKLTLSLLFDDGDTTLKLAQAQIDGMEDVPAAHAEWLAQWAIGQSEPGLAQSWYLRKKIAQQGPLKAGSALAYALVQ GDLDSVARTREQYLGQLSLSEQLEAHVRLDEPRQAANTFMAIQAGAPELAGSNNLQESLLLPTALSSQFHLEQRRLGALD IQDLQFVQYHPISDFTQLSVEARQRNFSSNDDELLQISDDEQRLSVALAYQRERFRSRLKLGQRNLLNNSETMADLELGA NWTQYWSGSLNYQWRTPADESSLLILGASRTGSQWLLNWRPSSTWQSSVDWANYDYHDLNESDLGSGSIINAQSTWRPWL SRFSPGVRVRHTRADFTAGGDSMAQVRALLPPGAQTLPLPQDYHESEIVLLLGQPDVHIRAHRLQGWGEIGYSENSLSGA GFTGRFGVEGPLIGRDEWKIYAEQQLNSGGSDEDSYRFGLQYRIYY
Sequences:
>Translated_926_residues MKFRLLLMVVLASVLAGAWTAHAADPEPYVERYYDRSYRVFMASGNLPRARQVIENALYWRSDDERWWRRLAEVSRWLGD PETALKAWRQVAELSNDPQAWKHVLELAPLTYNNRLALRAHKALLSVSPYDAGIIATIGRQYELLGQPEAGLRFFEQWRR SYPSKAVLREMQRLALNQGEDLLAAGYSREYMDRFGPEPLMAEQAADLYWLNGQREKALLDLNRDANQLPYIPALSRRIA VMAGELGEWDLALSRYQELVDNEDDQIDDLYNYITLSRYYQPERLALLMGRAWRKNGDPQLALGALYQLQSRGDDAAIDA FLKGLSAEQRQRLEQTPEFLRFYANLQLHRGDADAAQRWLNKALVLNSEDRETRISWMWLLIATGQDTALQQALVNWEDS ARSDRRYWNVLAASQMALGNAEQSLRYEIELLKTARDNWERQWYYSQALIASGRNGQAWPVMRRLKEQLPFTVEPQQQAT YRDMKLTLSLLFDDGDTTLKLAQAQIDGMEDVPAAHAEWLAQWAIGQSEPGLAQSWYLRKKIAQQGPLKAGSALAYALVQ GDLDSVARTREQYLGQLSLSEQLEAHVRLDEPRQAANTFMAIQAGAPELAGSNNLQESLLLPTALSSQFHLEQRRLGALD IQDLQFVQYHPISDFTQLSVEARQRNFSSNDDELLQISDDEQRLSVALAYQRERFRSRLKLGQRNLLNNSETMADLELGA NWTQYWSGSLNYQWRTPADESSLLILGASRTGSQWLLNWRPSSTWQSSVDWANYDYHDLNESDLGSGSIINAQSTWRPWL SRFSPGVRVRHTRADFTAGGDSMAQVRALLPPGAQTLPLPQDYHESEIVLLLGQPDVHIRAHRLQGWGEIGYSENSLSGA GFTGRFGVEGPLIGRDEWKIYAEQQLNSGGSDEDSYRFGLQYRIYY >Mature_926_residues MKFRLLLMVVLASVLAGAWTAHAADPEPYVERYYDRSYRVFMASGNLPRARQVIENALYWRSDDERWWRRLAEVSRWLGD PETALKAWRQVAELSNDPQAWKHVLELAPLTYNNRLALRAHKALLSVSPYDAGIIATIGRQYELLGQPEAGLRFFEQWRR SYPSKAVLREMQRLALNQGEDLLAAGYSREYMDRFGPEPLMAEQAADLYWLNGQREKALLDLNRDANQLPYIPALSRRIA VMAGELGEWDLALSRYQELVDNEDDQIDDLYNYITLSRYYQPERLALLMGRAWRKNGDPQLALGALYQLQSRGDDAAIDA FLKGLSAEQRQRLEQTPEFLRFYANLQLHRGDADAAQRWLNKALVLNSEDRETRISWMWLLIATGQDTALQQALVNWEDS ARSDRRYWNVLAASQMALGNAEQSLRYEIELLKTARDNWERQWYYSQALIASGRNGQAWPVMRRLKEQLPFTVEPQQQAT YRDMKLTLSLLFDDGDTTLKLAQAQIDGMEDVPAAHAEWLAQWAIGQSEPGLAQSWYLRKKIAQQGPLKAGSALAYALVQ GDLDSVARTREQYLGQLSLSEQLEAHVRLDEPRQAANTFMAIQAGAPELAGSNNLQESLLLPTALSSQFHLEQRRLGALD IQDLQFVQYHPISDFTQLSVEARQRNFSSNDDELLQISDDEQRLSVALAYQRERFRSRLKLGQRNLLNNSETMADLELGA NWTQYWSGSLNYQWRTPADESSLLILGASRTGSQWLLNWRPSSTWQSSVDWANYDYHDLNESDLGSGSIINAQSTWRPWL SRFSPGVRVRHTRADFTAGGDSMAQVRALLPPGAQTLPLPQDYHESEIVLLLGQPDVHIRAHRLQGWGEIGYSENSLSGA GFTGRFGVEGPLIGRDEWKIYAEQQLNSGGSDEDSYRFGLQYRIYY
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 105846; Mature: 105846
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFRLLLMVVLASVLAGAWTAHAADPEPYVERYYDRSYRVFMASGNLPRARQVIENALYW CCHHHHHHHHHHHHHHHCHHCCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHC RSDDERWWRRLAEVSRWLGDPETALKAWRQVAELSNDPQAWKHVLELAPLTYNNRLALRA CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEHEE HKALLSVSPYDAGIIATIGRQYELLGQPEAGLRFFEQWRRSYPSKAVLREMQRLALNQGE HHHHHCCCCCCCCHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC DLLAAGYSREYMDRFGPEPLMAEQAADLYWLNGQREKALLDLNRDANQLPYIPALSRRIA HHHHCCCCHHHHHHCCCCCHHHHHCCCEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHH VMAGELGEWDLALSRYQELVDNEDDQIDDLYNYITLSRYYQPERLALLMGRAWRKNGDPQ HHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC LALGALYQLQSRGDDAAIDAFLKGLSAEQRQRLEQTPEFLRFYANLQLHRGDADAAQRWL HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCCEEECCCHHHHHHHH NKALVLNSEDRETRISWMWLLIATGQDTALQQALVNWEDSARSDRRYWNVLAASQMALGN HHHEEECCCCCHHEEEEEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC AEQSLRYEIELLKTARDNWERQWYYSQALIASGRNGQAWPVMRRLKEQLPFTVEPQQQAT CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEECCCHHHH YRDMKLTLSLLFDDGDTTLKLAQAQIDGMEDVPAAHAEWLAQWAIGQSEPGLAQSWYLRK HHHHEEEEEEEEECCCCEEEEHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH KIAQQGPLKAGSALAYALVQGDLDSVARTREQYLGQLSLSEQLEAHVRLDEPRQAANTFM HHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHCEEE AIQAGAPELAGSNNLQESLLLPTALSSQFHLEQRRLGALDIQDLQFVQYHPISDFTQLSV EEECCCCCCCCCCCCHHHHHCHHHHCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH EARQRNFSSNDDELLQISDDEQRLSVALAYQRERFRSRLKLGQRNLLNNSETMADLELGA HHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC NWTQYWSGSLNYQWRTPADESSLLILGASRTGSQWLLNWRPSSTWQSSVDWANYDYHDLN CHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC ESDLGSGSIINAQSTWRPWLSRFSPGVRVRHTRADFTAGGDSMAQVRALLPPGAQTLPLP CCCCCCCCEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCC QDYHESEIVLLLGQPDVHIRAHRLQGWGEIGYSENSLSGAGFTGRFGVEGPLIGRDEWKI CCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE YAEQQLNSGGSDEDSYRFGLQYRIYY EEHHHCCCCCCCCCCEEEEEEEEEEC >Mature Secondary Structure MKFRLLLMVVLASVLAGAWTAHAADPEPYVERYYDRSYRVFMASGNLPRARQVIENALYW CCHHHHHHHHHHHHHHHCHHCCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHC RSDDERWWRRLAEVSRWLGDPETALKAWRQVAELSNDPQAWKHVLELAPLTYNNRLALRA CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEHEE HKALLSVSPYDAGIIATIGRQYELLGQPEAGLRFFEQWRRSYPSKAVLREMQRLALNQGE HHHHHCCCCCCCCHHHHHCCHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC DLLAAGYSREYMDRFGPEPLMAEQAADLYWLNGQREKALLDLNRDANQLPYIPALSRRIA HHHHCCCCHHHHHHCCCCCHHHHHCCCEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHH VMAGELGEWDLALSRYQELVDNEDDQIDDLYNYITLSRYYQPERLALLMGRAWRKNGDPQ HHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC LALGALYQLQSRGDDAAIDAFLKGLSAEQRQRLEQTPEFLRFYANLQLHRGDADAAQRWL HHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHCCEEECCCHHHHHHHH NKALVLNSEDRETRISWMWLLIATGQDTALQQALVNWEDSARSDRRYWNVLAASQMALGN HHHEEECCCCCHHEEEEEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCC AEQSLRYEIELLKTARDNWERQWYYSQALIASGRNGQAWPVMRRLKEQLPFTVEPQQQAT CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEECCCHHHH YRDMKLTLSLLFDDGDTTLKLAQAQIDGMEDVPAAHAEWLAQWAIGQSEPGLAQSWYLRK HHHHEEEEEEEEECCCCEEEEHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH KIAQQGPLKAGSALAYALVQGDLDSVARTREQYLGQLSLSEQLEAHVRLDEPRQAANTFM HHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHCEEE AIQAGAPELAGSNNLQESLLLPTALSSQFHLEQRRLGALDIQDLQFVQYHPISDFTQLSV EEECCCCCCCCCCCCHHHHHCHHHHCCHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHH EARQRNFSSNDDELLQISDDEQRLSVALAYQRERFRSRLKLGQRNLLNNSETMADLELGA HHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC NWTQYWSGSLNYQWRTPADESSLLILGASRTGSQWLLNWRPSSTWQSSVDWANYDYHDLN CHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC ESDLGSGSIINAQSTWRPWLSRFSPGVRVRHTRADFTAGGDSMAQVRALLPPGAQTLPLP CCCCCCCCEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCC QDYHESEIVLLLGQPDVHIRAHRLQGWGEIGYSENSLSGAGFTGRFGVEGPLIGRDEWKI CCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE YAEQQLNSGGSDEDSYRFGLQYRIYY EEHHHCCCCCCCCCCEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA