| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is oadA [H]
Identifier: 110833705
GI number: 110833705
Start: 939033
End: 940832
Strand: Direct
Name: oadA [H]
Synonym: ABO_0844
Alternate gene names: 110833705
Gene position: 939033-940832 (Clockwise)
Preceding gene: 110833704
Following gene: 110833706
Centisome position: 30.1
GC content: 57.72
Gene sequence:
>1800_bases ATGAGTGACCTGAAACCGTTGGGCATTACTGATGTGGTGTTACGCGATGCGCACCAATCCCTGTTTGCCACCCGTATGCG TTTGGATGACATGTTGCCGATTGCCGCGGAACTGGATGACATTGGCTTCTGGTCGTTGGAATCCTGGGGTGGGGCGACCT TTGACGCCTGTATCCGTTATCTGGGTGAAGATCCTTGGCAACGTATCCGAGAATTGAAACAGGCCATGCCGAAAACGCCG CAGCAAATGTTGCTGCGCGGCCAAAACCTGCTGGGCTATCGCCACTACGCGGATGATGTGGTGGATACCTTTGTGGAGCG GGCAGCAGAAAACGGCGTGGACGTGTTTCGTGTGTTTGATGCCATGAACGACATGCGCAACATTGAACGGGCCATCGCCG CCGTGGTGAAACAGGGCAAGCACGCCCAGGGCACCATCGCCTACACGGTCAGCCCGGTTCATACTTTGGATATGTGGGTG GAGCAGGGCAAAGTTATCGAACAGATGGGGGCCCACTCGGTTGCCATTAAAGACATGGCCGGGCTGTTGCGGCCTGCGGT GGCGTATGAACTGGTGACTCGCTTGAAAGCGGCCCTGAATATTCCCGTGCACATGCAGTCTCACGCCACCACTGGGCTGT CCACGGCCACGGCGTTGAAAGCGGCGGAGGCGGGTATCGATAACGTGGATACGGCCATTTCGTCCATGTCGATGACCTAC GGCCACAGCCCTACAGAATCAGTGGTGGCCATGCTGGAAGGTACGGACCGGGATACCGGATTGGATATCAAAAAGCTGAC CCGTATTGCCGGGTATTTTCGTGAGGTGCGTAAAAAGTACGCCGCCTTCGAGGGTAGCTTGCGTGGAGTGGATGCACGCA TCCTGGTGGCACAGGTGCCGGGCGGCATGCTGACCAACATGGAAAGCCAGCTGAAAGAGCAGGGCGCGGCGGACCGATTC GATGAAGTGCTGAAGGAAATTCCCGTCGTTCGCGAGGACCTGGGCTTTATTCCCCTGGTGACGCCTACTTCGCAAATCGT CGGCACCCAAGCAGTGCTTAATGTGCTTTCCGGCGAGCGCTACAAAGTCCTCAGCAAGGAAACCCGCGGCATTCTGCGTG GTGAATATGGCGCTGCTCCCGCGCCGTACAATGCCGAATTGCAGCAGCGAGCGTTGGATGGCGATGAGCCGGTCACCTGC CGCCCCGGTGACTTGCTCGACAACGAAATGGACAGCCTGCGTGACGAAGTGCTGTGCTTGGCAAAAGACAAAGGCCTGAC GCTGGAGGAAGGGCCGCGGTTAACCGATGACGTGCTCACCTACGCGCTGTTCCCGCAAATTGGCCAACGTTTTCTGGAAA ACCGTGGCGATGCCTCGGCGTTTGAGGCGGCGCCCAATGAACGCGGTGCAAACACGTGTGATAGCGCTCAGGCTGAAGGC GTTTACACCGTGGAAGTGGATGGCCAGCAGTACACGGTAAAAGTGAACGAGGGCGGAGATGTCACCGGCCTGCGTGAAAT GGGAGACCGGGCCGATCAAACGGCTACCGCCGCGCCCGCCGCAAACCCGGCCAACAGTGTGTCGGTGGCTGCGCCGTTAG CCGGAAATATTTTTCAGGTACTGGTAAAGCCTGGCGATCAGATCAGCGAAGGGCAAAAAATCATGGTGTTGGAAGCCATG AAAATGGAAACCGATGTGTCCAGTACCTGTGCCGGTGTGGTCAGCGAGGTTATTGTGAAAGAGGGCGATGCCGTGACTGT GGGGCAAGCCTTGCTCAGCGTGGAGCCTGCCCATGGATAA
Upstream 100 bases:
>100_bases CCCTTCTCAAGATTTGCCGCCGCCGGCAATCATCAAAGCGATCGAAAAAGCGGTGCAGCAGCACCGTCAGACTTCTCTGT CATAGATACCGGATTATTCC
Downstream 100 bases:
>100_bases GCTGCAAACCCTTTGGCACAGCACCGGGCTGTTTCACATGAGCGGCGGCCAGTTAGTCATGTTGCTGGTTTGTCTGGTGT TGTTGTGGTTGGCGATTCAC
Product: oxaloacetate decarboxylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 599; Mature: 598
Protein sequence:
>599_residues MSDLKPLGITDVVLRDAHQSLFATRMRLDDMLPIAAELDDIGFWSLESWGGATFDACIRYLGEDPWQRIRELKQAMPKTP QQMLLRGQNLLGYRHYADDVVDTFVERAAENGVDVFRVFDAMNDMRNIERAIAAVVKQGKHAQGTIAYTVSPVHTLDMWV EQGKVIEQMGAHSVAIKDMAGLLRPAVAYELVTRLKAALNIPVHMQSHATTGLSTATALKAAEAGIDNVDTAISSMSMTY GHSPTESVVAMLEGTDRDTGLDIKKLTRIAGYFREVRKKYAAFEGSLRGVDARILVAQVPGGMLTNMESQLKEQGAADRF DEVLKEIPVVREDLGFIPLVTPTSQIVGTQAVLNVLSGERYKVLSKETRGILRGEYGAAPAPYNAELQQRALDGDEPVTC RPGDLLDNEMDSLRDEVLCLAKDKGLTLEEGPRLTDDVLTYALFPQIGQRFLENRGDASAFEAAPNERGANTCDSAQAEG VYTVEVDGQQYTVKVNEGGDVTGLREMGDRADQTATAAPAANPANSVSVAAPLAGNIFQVLVKPGDQISEGQKIMVLEAM KMETDVSSTCAGVVSEVIVKEGDAVTVGQALLSVEPAHG
Sequences:
>Translated_599_residues MSDLKPLGITDVVLRDAHQSLFATRMRLDDMLPIAAELDDIGFWSLESWGGATFDACIRYLGEDPWQRIRELKQAMPKTP QQMLLRGQNLLGYRHYADDVVDTFVERAAENGVDVFRVFDAMNDMRNIERAIAAVVKQGKHAQGTIAYTVSPVHTLDMWV EQGKVIEQMGAHSVAIKDMAGLLRPAVAYELVTRLKAALNIPVHMQSHATTGLSTATALKAAEAGIDNVDTAISSMSMTY GHSPTESVVAMLEGTDRDTGLDIKKLTRIAGYFREVRKKYAAFEGSLRGVDARILVAQVPGGMLTNMESQLKEQGAADRF DEVLKEIPVVREDLGFIPLVTPTSQIVGTQAVLNVLSGERYKVLSKETRGILRGEYGAAPAPYNAELQQRALDGDEPVTC RPGDLLDNEMDSLRDEVLCLAKDKGLTLEEGPRLTDDVLTYALFPQIGQRFLENRGDASAFEAAPNERGANTCDSAQAEG VYTVEVDGQQYTVKVNEGGDVTGLREMGDRADQTATAAPAANPANSVSVAAPLAGNIFQVLVKPGDQISEGQKIMVLEAM KMETDVSSTCAGVVSEVIVKEGDAVTVGQALLSVEPAHG >Mature_598_residues SDLKPLGITDVVLRDAHQSLFATRMRLDDMLPIAAELDDIGFWSLESWGGATFDACIRYLGEDPWQRIRELKQAMPKTPQ QMLLRGQNLLGYRHYADDVVDTFVERAAENGVDVFRVFDAMNDMRNIERAIAAVVKQGKHAQGTIAYTVSPVHTLDMWVE QGKVIEQMGAHSVAIKDMAGLLRPAVAYELVTRLKAALNIPVHMQSHATTGLSTATALKAAEAGIDNVDTAISSMSMTYG HSPTESVVAMLEGTDRDTGLDIKKLTRIAGYFREVRKKYAAFEGSLRGVDARILVAQVPGGMLTNMESQLKEQGAADRFD EVLKEIPVVREDLGFIPLVTPTSQIVGTQAVLNVLSGERYKVLSKETRGILRGEYGAAPAPYNAELQQRALDGDEPVTCR PGDLLDNEMDSLRDEVLCLAKDKGLTLEEGPRLTDDVLTYALFPQIGQRFLENRGDASAFEAAPNERGANTCDSAQAEGV YTVEVDGQQYTVKVNEGGDVTGLREMGDRADQTATAAPAANPANSVSVAAPLAGNIFQVLVKPGDQISEGQKIMVLEAMK METDVSSTCAGVVSEVIVKEGDAVTVGQALLSVEPAHG
Specific function: Lyase and sodium transporter [H]
COG id: COG5016
COG function: function code C; Pyruvate/oxaloacetate carboxyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 biotinyl-binding domain [H]
Homologues:
Organism=Homo sapiens, GI106049528, Length=636, Percent_Identity=31.2893081761006, Blast_Score=260, Evalue=3e-69, Organism=Homo sapiens, GI106049295, Length=636, Percent_Identity=31.2893081761006, Blast_Score=260, Evalue=3e-69, Organism=Homo sapiens, GI106049292, Length=636, Percent_Identity=31.2893081761006, Blast_Score=260, Evalue=3e-69, Organism=Caenorhabditis elegans, GI17562816, Length=627, Percent_Identity=33.3333333333333, Blast_Score=310, Evalue=2e-84, Organism=Saccharomyces cerevisiae, GI6319695, Length=626, Percent_Identity=33.0670926517572, Blast_Score=318, Evalue=1e-87, Organism=Saccharomyces cerevisiae, GI6321376, Length=626, Percent_Identity=32.9073482428115, Blast_Score=317, Evalue=3e-87, Organism=Drosophila melanogaster, GI281363050, Length=626, Percent_Identity=34.6645367412141, Blast_Score=308, Evalue=8e-84, Organism=Drosophila melanogaster, GI24652224, Length=626, Percent_Identity=34.6645367412141, Blast_Score=308, Evalue=8e-84, Organism=Drosophila melanogaster, GI24652222, Length=626, Percent_Identity=34.6645367412141, Blast_Score=308, Evalue=8e-84, Organism=Drosophila melanogaster, GI24652220, Length=626, Percent_Identity=34.6645367412141, Blast_Score=308, Evalue=8e-84, Organism=Drosophila melanogaster, GI24652218, Length=626, Percent_Identity=34.6645367412141, Blast_Score=308, Evalue=8e-84, Organism=Drosophila melanogaster, GI24652212, Length=626, Percent_Identity=34.6645367412141, Blast_Score=308, Evalue=9e-84, Organism=Drosophila melanogaster, GI24652210, Length=626, Percent_Identity=34.6645367412141, Blast_Score=308, Evalue=9e-84, Organism=Drosophila melanogaster, GI24652214, Length=626, Percent_Identity=34.6645367412141, Blast_Score=308, Evalue=9e-84, Organism=Drosophila melanogaster, GI19921944, Length=626, Percent_Identity=34.6645367412141, Blast_Score=308, Evalue=9e-84, Organism=Drosophila melanogaster, GI24652216, Length=626, Percent_Identity=34.6645367412141, Blast_Score=308, Evalue=9e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR001882 - InterPro: IPR000089 - InterPro: IPR003379 - InterPro: IPR005776 - InterPro: IPR000891 - InterPro: IPR011053 [H]
Pfam domain/function: PF00364 Biotin_lipoyl; PF00682 HMGL-like; PF02436 PYC_OADA [H]
EC number: =4.1.1.3 [H]
Molecular weight: Translated: 64812; Mature: 64681
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: PS50991 PYR_CT ; PS50968 BIOTINYL_LIPOYL ; PS00188 BIOTIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLKPLGITDVVLRDAHQSLFATRMRLDDMLPIAAELDDIGFWSLESWGGATFDACIRY CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEECCCCCCCHHHHHHH LGEDPWQRIRELKQAMPKTPQQMLLRGQNLLGYRHYADDVVDTFVERAAENGVDVFRVFD HCCCHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH AMNDMRNIERAIAAVVKQGKHAQGTIAYTVSPVHTLDMWVEQGKVIEQMGAHSVAIKDMA HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHH GLLRPAVAYELVTRLKAALNIPVHMQSHATTGLSTATALKAAEAGIDNVDTAISSMSMTY HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC GHSPTESVVAMLEGTDRDTGLDIKKLTRIAGYFREVRKKYAAFEGSLRGVDARILVAQVP CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC GGMLTNMESQLKEQGAADRFDEVLKEIPVVREDLGFIPLVTPTSQIVGTQAVLNVLSGER CCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCC YKVLSKETRGILRGEYGAAPAPYNAELQQRALDGDEPVTCRPGDLLDNEMDSLRDEVLCL EEHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHEEE AKDKGLTLEEGPRLTDDVLTYALFPQIGQRFLENRGDASAFEAAPNERGANTCDSAQAEG ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCC VYTVEVDGQQYTVKVNEGGDVTGLREMGDRADQTATAAPAANPANSVSVAAPLAGNIFQV EEEEEECCCEEEEEECCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCCEEECCHHHHHHHH LVKPGDQISEGQKIMVLEAMKMETDVSSTCAGVVSEVIVKEGDAVTVGQALLSVEPAHG HHCCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCC >Mature Secondary Structure SDLKPLGITDVVLRDAHQSLFATRMRLDDMLPIAAELDDIGFWSLESWGGATFDACIRY CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEECCCCCCCHHHHHHH LGEDPWQRIRELKQAMPKTPQQMLLRGQNLLGYRHYADDVVDTFVERAAENGVDVFRVFD HCCCHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH AMNDMRNIERAIAAVVKQGKHAQGTIAYTVSPVHTLDMWVEQGKVIEQMGAHSVAIKDMA HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHH GLLRPAVAYELVTRLKAALNIPVHMQSHATTGLSTATALKAAEAGIDNVDTAISSMSMTY HHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHC GHSPTESVVAMLEGTDRDTGLDIKKLTRIAGYFREVRKKYAAFEGSLRGVDARILVAQVP CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC GGMLTNMESQLKEQGAADRFDEVLKEIPVVREDLGFIPLVTPTSQIVGTQAVLNVLSGER CCHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCC YKVLSKETRGILRGEYGAAPAPYNAELQQRALDGDEPVTCRPGDLLDNEMDSLRDEVLCL EEHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHEEE AKDKGLTLEEGPRLTDDVLTYALFPQIGQRFLENRGDASAFEAAPNERGANTCDSAQAEG ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCC VYTVEVDGQQYTVKVNEGGDVTGLREMGDRADQTATAAPAANPANSVSVAAPLAGNIFQV EEEEEECCCEEEEEECCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCCEEECCHHHHHHHH LVKPGDQISEGQKIMVLEAMKMETDVSSTCAGVVSEVIVKEGDAVTVGQALLSVEPAHG HHCCCCCCCCCCEEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2454915 [H]