| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is oadB [H]
Identifier: 110833706
GI number: 110833706
Start: 940825
End: 942123
Strand: Direct
Name: oadB [H]
Synonym: ABO_0845
Alternate gene names: 110833706
Gene position: 940825-942123 (Clockwise)
Preceding gene: 110833705
Following gene: 110833707
Centisome position: 30.15
GC content: 56.89
Gene sequence:
>1299_bases ATGGATAAGCTGCAAACCCTTTGGCACAGCACCGGGCTGTTTCACATGAGCGGCGGCCAGTTAGTCATGTTGCTGGTTTG TCTGGTGTTGTTGTGGTTGGCGATTCACAAGAAATTCGAGCCGCTACTGTTGTTGCCCATTGGTTTTGGTGGCCTGCTGG CGAATATTCCTCTGGCGGGCTTGGCGGAGTCTGCTATTAGCCAGGCGCTGCATTTTGGTCCAGCCGAGCTACTGGCCTCC ATGGCGCAGGTGCTGGGCATGGAACCCGATGCTGGCCGTGAGGCGCTTTATACGGCGGCTCAATCGGCAGGTCCCTCAGT ACAGGACCAGTTGCACCATCTGGCCGGCAACGCCAATTACGGTGACGGAATTCTGTATTTAATTTATACCGTGGGCCTGA CCACCGGGATCTTTCCGTTGTTGATCTTCATGGGCGTGGGAGCGATGACGGATTTCGGCCCGCTGCTGGCGAACCCACGC ACCCTGTTGCTGGGTGCTGCCGCGCAGTTCGGTATTTTCGCCGCCTTGATGGGGGCGTTGGCTCTGAATTTTCTAGGGTT GGAGTTTTCCCTATCGGATGCGGCGGCCATTGGCATTATCGGTGGCGCGGATGGCCCCACCTCGATCTATGTCACCACCA AACTGGCGCCACACTTACTCGGTGCCATTGCTGTAGCGGCATATTCCTACATGGCGCTGGTGCCGATTATTCAGCCTCCC ATTATTCGTGCGCTGACGTCGGAAAAAGAACGCCAGATAAAAATGGAACAATTGCGTCCTGTCAGTCGAGTGGAAAAAAT TCTGTTCCCTATTTTGCTGTTAGTGTTGGTGGCCCTCGTGCTTCCCGATGCCGCGCCGCTATTGGGCATGTTCTGCTTGG GTAACCTGATGAAGGAATCCGGTGTTGTGAACCGGTTAGTGGATACCACCAGTAACGCGCTGATTAATGTGGTCACCATC ATGCTGGGGTTAGCCGTGGGCTCGAAACTCAGCGCCGACAAATTCCTGGTGATGGAAACCCTGGGCATTCTAGCCTTGGG CCTGGCGGCGTTCATGATTGGCACCGCAACCGGCGTGTTAATGGCCAAGCTGCTCAACCGCGTTAGTCGCCACCCGGTTA ACCCCATCATTGGCGCTGCCGGTGTCTCCGCCGTGCCTATGGCGGCACGGGTGGCTAACAAGGTAGGGCTGGACGCCAAC CCCCATAACTTCCTTCTGATGCACGCCATGGGCCCTAACGTGGCTGGAGTTATCGGCTCTGCTGTGGCCGCCGGCGTGCT GCTCAACTTTGCCGGCTGA
Upstream 100 bases:
>100_bases GATGTGTCCAGTACCTGTGCCGGTGTGGTCAGCGAGGTTATTGTGAAAGAGGGCGATGCCGTGACTGTGGGGCAAGCCTT GCTCAGCGTGGAGCCTGCCC
Downstream 100 bases:
>100_bases TCGATTTTCCCCGCGGTGGCCCCAGGGTCACGCGATCCTTTGCTGCCACGGGGAACCCGCAGAGTTATAGTACGTCGAAG ACGCAATCCCCCGCCCTTCG
Product: oxaloacetate decarboxylase subunit beta
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 432; Mature: 432
Protein sequence:
>432_residues MDKLQTLWHSTGLFHMSGGQLVMLLVCLVLLWLAIHKKFEPLLLLPIGFGGLLANIPLAGLAESAISQALHFGPAELLAS MAQVLGMEPDAGREALYTAAQSAGPSVQDQLHHLAGNANYGDGILYLIYTVGLTTGIFPLLIFMGVGAMTDFGPLLANPR TLLLGAAAQFGIFAALMGALALNFLGLEFSLSDAAAIGIIGGADGPTSIYVTTKLAPHLLGAIAVAAYSYMALVPIIQPP IIRALTSEKERQIKMEQLRPVSRVEKILFPILLLVLVALVLPDAAPLLGMFCLGNLMKESGVVNRLVDTTSNALINVVTI MLGLAVGSKLSADKFLVMETLGILALGLAAFMIGTATGVLMAKLLNRVSRHPVNPIIGAAGVSAVPMAARVANKVGLDAN PHNFLLMHAMGPNVAGVIGSAVAAGVLLNFAG
Sequences:
>Translated_432_residues MDKLQTLWHSTGLFHMSGGQLVMLLVCLVLLWLAIHKKFEPLLLLPIGFGGLLANIPLAGLAESAISQALHFGPAELLAS MAQVLGMEPDAGREALYTAAQSAGPSVQDQLHHLAGNANYGDGILYLIYTVGLTTGIFPLLIFMGVGAMTDFGPLLANPR TLLLGAAAQFGIFAALMGALALNFLGLEFSLSDAAAIGIIGGADGPTSIYVTTKLAPHLLGAIAVAAYSYMALVPIIQPP IIRALTSEKERQIKMEQLRPVSRVEKILFPILLLVLVALVLPDAAPLLGMFCLGNLMKESGVVNRLVDTTSNALINVVTI MLGLAVGSKLSADKFLVMETLGILALGLAAFMIGTATGVLMAKLLNRVSRHPVNPIIGAAGVSAVPMAARVANKVGLDAN PHNFLLMHAMGPNVAGVIGSAVAAGVLLNFAG >Mature_432_residues MDKLQTLWHSTGLFHMSGGQLVMLLVCLVLLWLAIHKKFEPLLLLPIGFGGLLANIPLAGLAESAISQALHFGPAELLAS MAQVLGMEPDAGREALYTAAQSAGPSVQDQLHHLAGNANYGDGILYLIYTVGLTTGIFPLLIFMGVGAMTDFGPLLANPR TLLLGAAAQFGIFAALMGALALNFLGLEFSLSDAAAIGIIGGADGPTSIYVTTKLAPHLLGAIAVAAYSYMALVPIIQPP IIRALTSEKERQIKMEQLRPVSRVEKILFPILLLVLVALVLPDAAPLLGMFCLGNLMKESGVVNRLVDTTSNALINVVTI MLGLAVGSKLSADKFLVMETLGILALGLAAFMIGTATGVLMAKLLNRVSRHPVNPIIGAAGVSAVPMAARVANKVGLDAN PHNFLLMHAMGPNVAGVIGSAVAAGVLLNFAG
Specific function: Lyase and sodium transporter [H]
COG id: COG1883
COG function: function code C; Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gcdB/mmdB/oadB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005661 [H]
Pfam domain/function: PF03977 OAD_beta [H]
EC number: =4.1.1.3 [H]
Molecular weight: Translated: 44923; Mature: 44923
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: PS00211 ABC_TRANSPORTER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKLQTLWHSTGLFHMSGGQLVMLLVCLVLLWLAIHKKFEPLLLLPIGFGGLLANIPLAG CCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCHHH LAESAISQALHFGPAELLASMAQVLGMEPDAGREALYTAAQSAGPSVQDQLHHLAGNANY HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCC GDGILYLIYTVGLTTGIFPLLIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFAALMGAL CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHH ALNFLGLEFSLSDAAAIGIIGGADGPTSIYVTTKLAPHLLGAIAVAAYSYMALVPIIQPP HHHHHCCEEECCCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCH IIRALTSEKERQIKMEQLRPVSRVEKILFPILLLVLVALVLPDAAPLLGMFCLGNLMKES HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH GVVNRLVDTTSNALINVVTIMLGLAVGSKLSADKFLVMETLGILALGLAAFMIGTATGVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MAKLLNRVSRHPVNPIIGAAGVSAVPMAARVANKVGLDANPHNFLLMHAMGPNVAGVIGS HHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHH AVAAGVLLNFAG HHHHHHHHHCCC >Mature Secondary Structure MDKLQTLWHSTGLFHMSGGQLVMLLVCLVLLWLAIHKKFEPLLLLPIGFGGLLANIPLAG CCHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCHHH LAESAISQALHFGPAELLASMAQVLGMEPDAGREALYTAAQSAGPSVQDQLHHLAGNANY HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCC GDGILYLIYTVGLTTGIFPLLIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFAALMGAL CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHH ALNFLGLEFSLSDAAAIGIIGGADGPTSIYVTTKLAPHLLGAIAVAAYSYMALVPIIQPP HHHHHCCEEECCCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCH IIRALTSEKERQIKMEQLRPVSRVEKILFPILLLVLVALVLPDAAPLLGMFCLGNLMKES HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH GVVNRLVDTTSNALINVVTIMLGLAVGSKLSADKFLVMETLGILALGLAAFMIGTATGVL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MAKLLNRVSRHPVNPIIGAAGVSAVPMAARVANKVGLDANPHNFLLMHAMGPNVAGVIGS HHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHH AVAAGVLLNFAG HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11248100 [H]