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The map label for this gene is pal [H]

Identifier: 110833620

GI number: 110833620

Start: 853792

End: 854361

Strand: Direct

Name: pal [H]

Synonym: ABO_0759

Alternate gene names: 110833620

Gene position: 853792-854361 (Clockwise)

Preceding gene: 110833619

Following gene: 110833621

Centisome position: 27.36

GC content: 51.4

Gene sequence:

>570_bases
ATGCGTTCATTACTAAACCCGCTGTTTGCTCTGGTTCTGGCAGCTGCATTGGCAGCTTGTTCCAGTACACCGACTGAAGA
TGATACCTCTGCTACCGATAGCATGTCTCAGACTGATACCTCTCCAGTAACATCTGTTGAGCGGTCAGAGCCGGTTAAGC
CCGACACTAGCAGCATTCCGCTAACTGCTGACAACTTCTACAACCATCCGTCCAACTATGACGGTACCACCGATTCACGT
GTTATTTACTTCGCATTCGACAGCAACACCATTCCGGCTGCGGCGTTTGAAACCCTGCGAGCCCACGCGACCTACTTGAA
GAACAACGCTAACGCGAAAATTCGTCTGGAAGGCCACGCTGATGAGCGCGGTACTCGTGAATACAACGTTGCACTGTCCG
AGCGTCGCTCTAAAGCGGTAGAGAAGTTCCTGCGCGTACAGGGTGTTGCTTCTTCTCAGCTTGAAATCGTGTCCTATGGC
GAAGAGAAGCCGGCAGCATTTGGTCACTCTGAAATGGATTGGGCCAAAAACCGCCGTGTAGAAATTAACTATCTGTCTGG
CCGTCCGTAA

Upstream 100 bases:

>100_bases
AGCTGCCGTCGAAGGAAGGGGAAGTCAGAGAGCCGGCATGGTCGCCGTTCCTCTGAGTGGTGCTCGAGTCCAATACTAGG
AAATTATAGGAGTTTTTCGC

Downstream 100 bases:

>100_bases
GGCATGAAGGTATTGATGAGAGCGCGCCTGATTGTAGGCGCGATGCTCGGCACCTTGGTGTTCTGTGCACATGCACAGAG
CACTGGGCCGCTGGCCGTAG

Product: peptidogycan-associated lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MRSLLNPLFALVLAAALAACSSTPTEDDTSATDSMSQTDTSPVTSVERSEPVKPDTSSIPLTADNFYNHPSNYDGTTDSR
VIYFAFDSNTIPAAAFETLRAHATYLKNNANAKIRLEGHADERGTREYNVALSERRSKAVEKFLRVQGVASSQLEIVSYG
EEKPAAFGHSEMDWAKNRRVEINYLSGRP

Sequences:

>Translated_189_residues
MRSLLNPLFALVLAAALAACSSTPTEDDTSATDSMSQTDTSPVTSVERSEPVKPDTSSIPLTADNFYNHPSNYDGTTDSR
VIYFAFDSNTIPAAAFETLRAHATYLKNNANAKIRLEGHADERGTREYNVALSERRSKAVEKFLRVQGVASSQLEIVSYG
EEKPAAFGHSEMDWAKNRRVEINYLSGRP
>Mature_189_residues
MRSLLNPLFALVLAAALAACSSTPTEDDTSATDSMSQTDTSPVTSVERSEPVKPDTSSIPLTADNFYNHPSNYDGTTDSR
VIYFAFDSNTIPAAAFETLRAHATYLKNNANAKIRLEGHADERGTREYNVALSERRSKAVEKFLRVQGVASSQLEIVSYG
EEKPAAFGHSEMDWAKNRRVEINYLSGRP

Specific function: Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=104, Percent_Identity=48.0769230769231, Blast_Score=112, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 20767; Mature: 20767

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLLNPLFALVLAAALAACSSTPTEDDTSATDSMSQTDTSPVTSVERSEPVKPDTSSIP
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
LTADNFYNHPSNYDGTTDSRVIYFAFDSNTIPAAAFETLRAHATYLKNNANAKIRLEGHA
EEHHHCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
DERGTREYNVALSERRSKAVEKFLRVQGVASSQLEIVSYGEEKPAAFGHSEMDWAKNRRV
CCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCEE
EINYLSGRP
EEEECCCCC
>Mature Secondary Structure
MRSLLNPLFALVLAAALAACSSTPTEDDTSATDSMSQTDTSPVTSVERSEPVKPDTSSIP
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC
LTADNFYNHPSNYDGTTDSRVIYFAFDSNTIPAAAFETLRAHATYLKNNANAKIRLEGHA
EEHHHCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
DERGTREYNVALSERRSKAVEKFLRVQGVASSQLEIVSYGEEKPAAFGHSEMDWAKNRRV
CCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHCCCEE
EINYLSGRP
EEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]