| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
Click here to switch to the map view.
The map label for this gene is 110833425
Identifier: 110833425
GI number: 110833425
Start: 621924
End: 623522
Strand: Direct
Name: 110833425
Synonym: ABO_0564
Alternate gene names: NA
Gene position: 621924-623522 (Clockwise)
Preceding gene: 110833424
Following gene: 110833427
Centisome position: 19.93
GC content: 57.85
Gene sequence:
>1599_bases ATGAAACGTGTGTTACTGCTTACTTGCGCCCTGATTCCGCTTTCTCTTTTCGCTGCCGACTTTGCGGTCACCGCGCCGGT GAATAAGGCCGTGTTGTTTCCTGCTCAGGCGCATCTTACTCGCACTTTTAGTCAGGCCTTGCCCGCCGGTGAGCACCAGT TGGTGGTGAAGGGGTTGCCTGAGTTGGATCTGGATAGTCTGCAAGTGGCGGTTAACGGCGCTGAGTTGCTGGCAATCCGG CAAGGGTTTGCCGTTGGGGACGTGGATGTATCAGCTCACCGGGCTGAGTTGGAGGCGGCAATTCGCAAGCTGGAGCAGGC CATGGCCGAAGCCAAGGCAGCCGATGATCTTGATCAACAGCAAATCAATCACCTTCAATCCCTGATGGGCCAGGCACCTC AAGGACAGGCCGTGTTTGCCCAGGTGCCGGTAGAAAAATGGGCCAGCGCCTGGGAGTCCATTGGCAAAGCGGTGACGCAA CGGCAAACAGCTATCAACCAGCGGGCGGAGATTCGGCATGGGCAGCAGCAGGAGTTGGATGCCCTTCGTCAGGAGCGTCA GCTGCTGGGCCAGGGGCAGACTCGTAGCCGCCAGTTGATACTGACCGTGGCGGCTCCTAACAAGTCCACCGCGCAGGTGG AACTTGCCTATTTTACTGGCCAGGCCGGTTGGCAGAATCAGTTGCGTGTAGATCTGGATAGCGGCAACGAGACCGTAGCG GTGACCGGCATTGCCCAGATTCACAACCGTACCGGTGAGGACTGGCAGAATGTCAGTGCCACCCTAGGGTTAGTGCCCGC CGGTTATCGCCCCCTCCCGGATCTGCACCCTTGGCTGGTACGCCTGGCGACACCACAGCCGGCGATGCGTAAGTCATCGT TGCATTCCGTAATGGCGGAATCTGCGGCCTATGAGACAGATATGGCTCAGCGTATCCAGGCGATGCCCGTGGCAGCGCCT GTGGCGCACGGTTTTGATATGCGTGTACCGCTTTCAGCGCCGCTCAATCTGGCCAGTGGTGACGCTACCGCGCGGCTTCC TTATCAGCAGGCGGCGCTGCCGGTAACTTTGACCCGCGAAAGTTACTTATGGCAGCAGCCGGCAGTGTTACTGGTGGGGG AGTGGCAGAACTCCAGCCCGCTGCCCTGGTTGCCCGGTCACGTTACCCTGTTGCGTGATGGCCAACGCTTGGCCCGTTAT TACCGCGGCAACAGTATTAAGCAGGGCGAGCACGTGAAGATGAGTTTCGGTGATGATCCGCGCTTGCAGATTGCGGTGGT GCGCGAACCCTCACAGCAAGGAGAGGTGGGCTTGATCAATAAAGAAAGCACGCTCTCTGCGTTGAAGAATATTACTCTGT CGTCCCATTACGATAAGGCCGTGACGGTGAATTTGTTGGATCGACTTCCGGTCGCCGGAAACGACAATATTACTATCACA GCCAAGGGCAAGGCCGCAGATGCCAAGGATGTGAGTGGCGTGAAAGGACTGCAACGATGGCAGTTCACCTTGCCCGCCGG GGGCGAAGAAAGCCTCAAACAAGGTTTCGAAATTCGCTACCCTGAAGATGCAATTCTGAGCGGTGTAGAGGGCTTGTGA
Upstream 100 bases:
>100_bases TCAACCCCGGTCGCTTAGGCTGGCAGAGTCTCGCCTGCTTGAACCTTTCCCCTTACCTGCGGTACTAACAGGTATTCGCC CAACGGTAAGGCTCCTAAAA
Downstream 100 bases:
>100_bases GGAAAGTTCAACGTTGAAAAATGAAACGGATAAGGGTGTAGAGGCTACGTTTTAAGCCAGCAGACCGCGCCCAACGTTAA AAAGTTTGAGCGCGGCCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 532; Mature: 532
Protein sequence:
>532_residues MKRVLLLTCALIPLSLFAADFAVTAPVNKAVLFPAQAHLTRTFSQALPAGEHQLVVKGLPELDLDSLQVAVNGAELLAIR QGFAVGDVDVSAHRAELEAAIRKLEQAMAEAKAADDLDQQQINHLQSLMGQAPQGQAVFAQVPVEKWASAWESIGKAVTQ RQTAINQRAEIRHGQQQELDALRQERQLLGQGQTRSRQLILTVAAPNKSTAQVELAYFTGQAGWQNQLRVDLDSGNETVA VTGIAQIHNRTGEDWQNVSATLGLVPAGYRPLPDLHPWLVRLATPQPAMRKSSLHSVMAESAAYETDMAQRIQAMPVAAP VAHGFDMRVPLSAPLNLASGDATARLPYQQAALPVTLTRESYLWQQPAVLLVGEWQNSSPLPWLPGHVTLLRDGQRLARY YRGNSIKQGEHVKMSFGDDPRLQIAVVREPSQQGEVGLINKESTLSALKNITLSSHYDKAVTVNLLDRLPVAGNDNITIT AKGKAADAKDVSGVKGLQRWQFTLPAGGEESLKQGFEIRYPEDAILSGVEGL
Sequences:
>Translated_532_residues MKRVLLLTCALIPLSLFAADFAVTAPVNKAVLFPAQAHLTRTFSQALPAGEHQLVVKGLPELDLDSLQVAVNGAELLAIR QGFAVGDVDVSAHRAELEAAIRKLEQAMAEAKAADDLDQQQINHLQSLMGQAPQGQAVFAQVPVEKWASAWESIGKAVTQ RQTAINQRAEIRHGQQQELDALRQERQLLGQGQTRSRQLILTVAAPNKSTAQVELAYFTGQAGWQNQLRVDLDSGNETVA VTGIAQIHNRTGEDWQNVSATLGLVPAGYRPLPDLHPWLVRLATPQPAMRKSSLHSVMAESAAYETDMAQRIQAMPVAAP VAHGFDMRVPLSAPLNLASGDATARLPYQQAALPVTLTRESYLWQQPAVLLVGEWQNSSPLPWLPGHVTLLRDGQRLARY YRGNSIKQGEHVKMSFGDDPRLQIAVVREPSQQGEVGLINKESTLSALKNITLSSHYDKAVTVNLLDRLPVAGNDNITIT AKGKAADAKDVSGVKGLQRWQFTLPAGGEESLKQGFEIRYPEDAILSGVEGL >Mature_532_residues MKRVLLLTCALIPLSLFAADFAVTAPVNKAVLFPAQAHLTRTFSQALPAGEHQLVVKGLPELDLDSLQVAVNGAELLAIR QGFAVGDVDVSAHRAELEAAIRKLEQAMAEAKAADDLDQQQINHLQSLMGQAPQGQAVFAQVPVEKWASAWESIGKAVTQ RQTAINQRAEIRHGQQQELDALRQERQLLGQGQTRSRQLILTVAAPNKSTAQVELAYFTGQAGWQNQLRVDLDSGNETVA VTGIAQIHNRTGEDWQNVSATLGLVPAGYRPLPDLHPWLVRLATPQPAMRKSSLHSVMAESAAYETDMAQRIQAMPVAAP VAHGFDMRVPLSAPLNLASGDATARLPYQQAALPVTLTRESYLWQQPAVLLVGEWQNSSPLPWLPGHVTLLRDGQRLARY YRGNSIKQGEHVKMSFGDDPRLQIAVVREPSQQGEVGLINKESTLSALKNITLSSHYDKAVTVNLLDRLPVAGNDNITIT AKGKAADAKDVSGVKGLQRWQFTLPAGGEESLKQGFEIRYPEDAILSGVEGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57816; Mature: 57816
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRVLLLTCALIPLSLFAADFAVTAPVNKAVLFPAQAHLTRTFSQALPAGEHQLVVKGLP CCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEECCC ELDLDSLQVAVNGAELLAIRQGFAVGDVDVSAHRAELEAAIRKLEQAMAEAKAADDLDQQ CCCCCCEEEEECCCEEEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH QINHLQSLMGQAPQGQAVFAQVPVEKWASAWESIGKAVTQRQTAINQRAEIRHGQQQELD HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH ALRQERQLLGQGQTRSRQLILTVAAPNKSTAQVELAYFTGQAGWQNQLRVDLDSGNETVA HHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEE VTGIAQIHNRTGEDWQNVSATLGLVPAGYRPLPDLHPWLVRLATPQPAMRKSSLHSVMAE EEEHHHHHCCCCCCHHCCHHEEEECCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHH SAAYETDMAQRIQAMPVAAPVAHGFDMRVPLSAPLNLASGDATARLPYQQAALPVTLTRE HHHHHHHHHHHHHHCCCHHHHHCCCCEEECCCCCCCCCCCCCEEECCHHHCCCEEEECCC SYLWQQPAVLLVGEWQNSSPLPWLPGHVTLLRDGQRLARYYRGNSIKQGEHVKMSFGDDP HHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCCEEEEECCCCC RLQIAVVREPSQQGEVGLINKESTLSALKNITLSSHYDKAVTVNLLDRLPVAGNDNITIT CEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCCCCCCCEEEEEHHHCCCCCCCCCEEEE AKGKAADAKDVSGVKGLQRWQFTLPAGGEESLKQGFEIRYPEDAILSGVEGL ECCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHCCCEEECCCHHHHCCCCCC >Mature Secondary Structure MKRVLLLTCALIPLSLFAADFAVTAPVNKAVLFPAQAHLTRTFSQALPAGEHQLVVKGLP CCHHHHHHHHHHHHHHHHHHHEEECCCCCEEEECHHHHHHHHHHHHCCCCCCEEEEECCC ELDLDSLQVAVNGAELLAIRQGFAVGDVDVSAHRAELEAAIRKLEQAMAEAKAADDLDQQ CCCCCCEEEEECCCEEEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH QINHLQSLMGQAPQGQAVFAQVPVEKWASAWESIGKAVTQRQTAINQRAEIRHGQQQELD HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH ALRQERQLLGQGQTRSRQLILTVAAPNKSTAQVELAYFTGQAGWQNQLRVDLDSGNETVA HHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCEEE VTGIAQIHNRTGEDWQNVSATLGLVPAGYRPLPDLHPWLVRLATPQPAMRKSSLHSVMAE EEEHHHHHCCCCCCHHCCHHEEEECCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHH SAAYETDMAQRIQAMPVAAPVAHGFDMRVPLSAPLNLASGDATARLPYQQAALPVTLTRE HHHHHHHHHHHHHHCCCHHHHHCCCCEEECCCCCCCCCCCCCEEECCHHHCCCEEEECCC SYLWQQPAVLLVGEWQNSSPLPWLPGHVTLLRDGQRLARYYRGNSIKQGEHVKMSFGDDP HHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCCEEEEECCCCC RLQIAVVREPSQQGEVGLINKESTLSALKNITLSSHYDKAVTVNLLDRLPVAGNDNITIT CEEEEEEECCCCCCCEEEECCHHHHHHHHHCCCCCCCCCEEEEEHHHCCCCCCCCCEEEE AKGKAADAKDVSGVKGLQRWQFTLPAGGEESLKQGFEIRYPEDAILSGVEGL ECCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHCCCEEECCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA