BacMap

Definition	Mesorhizobium sp. BNC1, complete genome.
Accession	NC_008254
Length	4,412,446

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The map label for this gene is yxnA [H]

Identifier: 110636010

GI number: 110636010

Start: 3972545

End: 3973585

Strand: Reverse

Name: yxnA [H]

Synonym: Meso_3685

Alternate gene names: 110636010

Gene position: 3973585-3972545 (Counterclockwise)

Preceding gene: 110636011

Following gene: 110636009

Centisome position: 90.05

GC content: 64.07

Gene sequence:

>1041_bases
ATGGCGAGGCGAAGAAGCGGTGAGGCGCGCCGCGAGGTGGTGGTGATCACCGGCGCATCCGCCGGGGTCGGCCGGGCGGT
GGCTCACCGCTTTGCGCGGTCGGGCGCGGCTGTGGCGCTTATCGCGCGGGACCAGGCCGCGCTTGAGGAAACGAAGGCGG
AGGTGGAAGCTGAAGGTGGGCATGCCATGGTGCTGCCGCTGGATCTGGCCGATTCCGATGCCGTCTTCGCCGCCGCTCGT
GACATTGAGGAAGAACTTGGACCCATCGATGTCTGGATCAACAACGCGATGGCCACGATCTTTTCGCCTCTCTCCGAGAT
AAGGCCGGAGGAGTTCCGTCGCGTTACGGAAACCACTTATCTGGGCTATGTGCATGGAACCATGGCCGCACTCCAGCACA
TGCGCCGGCGCAACCGCGGTGTGATCGTGCAAGTCGGCTCCGCGCTCTCCTATCGCGGAATTCCCCTGCAATCGGCCTAT
TGCGGAGCCAAGCACGCCATTCGAGGCTTCACGGACTCGCTGCGTTGCGAACTGATCCACGAAAGAAGCCGGATCAAGCT
CACCACGGTGCATCTGCCTGCGGTCAACACACCGCAATTTGATTGGGCGCGCACGCATCTCGCCAACGAGCCCCGTCCGG
TCGCGCCCGTCTTCCAGCCGGAAGTGGCGGCCGAAGCGATCTTCGATGCCTCCCGCAATCCTCGCCGCGAAGTGTGGCTC
GGTTCCAGCACGGCTCAGGTTATTCTGGGCAACGCCCTCGCGCCCTGGCTTCTCGACAGATATCTGGCGCGCGTTTGCTA
TGAAGGGCAGCAGCGGCAGCGGCAATTGCCGCGGGGTCGCGCGGACAACCTGTTTCATCCGGTGCACGAACCGCACAGCA
CGCACGGATCTTTCGATAAGGAGGCTTCGTCCTCGGCCCTCGCTTTTTCGGAAAACACGTTGAGAATTGCCGCTGCCGTG
GCGGGATTGGGAGCGGCGATGATTGTCGGCGTTCTGGCGCGAGGCGCCCTGTCCGCCCGGTCGTTTCCGCGGAGGCGCTG
A

Upstream 100 bases:

>100_bases
AATGCCGTCGATCGAAGATGGGCATTTGCGCATGAGCTTGGAACCATACGGCGTGCGCTGGCTGGGTCTGCCGCGCTGAT
GGCGATGCTGGAGGAGTGAT

Downstream 100 bases:

>100_bases
CAGCCGGTCTGCTGGAACATTCGGAGCGGGCATGGGTTTGGGCCGCATTGCCTTTGGCCTCACTCGAGGGAGCATCCGAT
GCGTCACAGACACCATAATC

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MARRRSGEARREVVVITGASAGVGRAVAHRFARSGAAVALIARDQAALEETKAEVEAEGGHAMVLPLDLADSDAVFAAAR
DIEEELGPIDVWINNAMATIFSPLSEIRPEEFRRVTETTYLGYVHGTMAALQHMRRRNRGVIVQVGSALSYRGIPLQSAY
CGAKHAIRGFTDSLRCELIHERSRIKLTTVHLPAVNTPQFDWARTHLANEPRPVAPVFQPEVAAEAIFDASRNPRREVWL
GSSTAQVILGNALAPWLLDRYLARVCYEGQQRQRQLPRGRADNLFHPVHEPHSTHGSFDKEASSSALAFSENTLRIAAAV
AGLGAAMIVGVLARGALSARSFPRRR

Sequences:

>Translated_346_residues
MARRRSGEARREVVVITGASAGVGRAVAHRFARSGAAVALIARDQAALEETKAEVEAEGGHAMVLPLDLADSDAVFAAAR
DIEEELGPIDVWINNAMATIFSPLSEIRPEEFRRVTETTYLGYVHGTMAALQHMRRRNRGVIVQVGSALSYRGIPLQSAY
CGAKHAIRGFTDSLRCELIHERSRIKLTTVHLPAVNTPQFDWARTHLANEPRPVAPVFQPEVAAEAIFDASRNPRREVWL
GSSTAQVILGNALAPWLLDRYLARVCYEGQQRQRQLPRGRADNLFHPVHEPHSTHGSFDKEASSSALAFSENTLRIAAAV
AGLGAAMIVGVLARGALSARSFPRRR
>Mature_345_residues
ARRRSGEARREVVVITGASAGVGRAVAHRFARSGAAVALIARDQAALEETKAEVEAEGGHAMVLPLDLADSDAVFAAARD
IEEELGPIDVWINNAMATIFSPLSEIRPEEFRRVTETTYLGYVHGTMAALQHMRRRNRGVIVQVGSALSYRGIPLQSAYC
GAKHAIRGFTDSLRCELIHERSRIKLTTVHLPAVNTPQFDWARTHLANEPRPVAPVFQPEVAAEAIFDASRNPRREVWLG
SSTAQVILGNALAPWLLDRYLARVCYEGQQRQRQLPRGRADNLFHPVHEPHSTHGSFDKEASSSALAFSENTLRIAAAVA
GLGAAMIVGVLARGALSARSFPRRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706318, Length=181, Percent_Identity=37.0165745856354, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI20149619, Length=189, Percent_Identity=37.037037037037, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI142976729, Length=262, Percent_Identity=27.0992366412214, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI4503817, Length=226, Percent_Identity=28.7610619469027, Blast_Score=96, Evalue=6e-20,
Organism=Homo sapiens, GI210032110, Length=167, Percent_Identity=32.3353293413174, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI157739938, Length=245, Percent_Identity=28.1632653061224, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI40807363, Length=231, Percent_Identity=25.5411255411255, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI40254992, Length=177, Percent_Identity=30.5084745762712, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=27.6422764227642, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI223718074, Length=175, Percent_Identity=32, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI7657478, Length=179, Percent_Identity=29.608938547486, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI32455239, Length=188, Percent_Identity=29.7872340425532, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI5031765, Length=188, Percent_Identity=29.7872340425532, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI224922801, Length=177, Percent_Identity=26.5536723163842, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI31542939, Length=191, Percent_Identity=26.1780104712042, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI7705925, Length=199, Percent_Identity=27.6381909547739, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI25282469, Length=251, Percent_Identity=27.4900398406374, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI4557649, Length=201, Percent_Identity=26.3681592039801, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1788459, Length=245, Percent_Identity=26.9387755102041, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787820, Length=227, Percent_Identity=26.8722466960352, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787335, Length=167, Percent_Identity=28.7425149700599, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790717, Length=167, Percent_Identity=27.5449101796407, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786701, Length=238, Percent_Identity=28.1512605042017, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=218, Percent_Identity=32.5688073394495, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI193203115, Length=228, Percent_Identity=28.5087719298246, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI193203117, Length=224, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17564282, Length=233, Percent_Identity=27.0386266094421, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17508895, Length=224, Percent_Identity=27.2321428571429, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71997402, Length=174, Percent_Identity=32.183908045977, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=177, Percent_Identity=28.2485875706215, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=197, Percent_Identity=29.4416243654822, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=245, Percent_Identity=29.3877551020408, Blast_Score=96, Evalue=9e-21,
Organism=Saccharomyces cerevisiae, GI6319635, Length=192, Percent_Identity=29.1666666666667, Blast_Score=67, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24581726, Length=274, Percent_Identity=29.9270072992701, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI21358495, Length=182, Percent_Identity=31.8681318681319, Blast_Score=90, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24640492, Length=232, Percent_Identity=28.0172413793103, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21356301, Length=253, Percent_Identity=27.6679841897233, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI281364892, Length=251, Percent_Identity=26.6932270916335, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24641232, Length=197, Percent_Identity=30.9644670050761, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI23397609, Length=177, Percent_Identity=32.7683615819209, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007236, Length=231, Percent_Identity=26.8398268398268, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI116007238, Length=198, Percent_Identity=28.2828282828283, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24580925, Length=177, Percent_Identity=29.9435028248588, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28571387, Length=192, Percent_Identity=31.25, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24648944, Length=230, Percent_Identity=29.1304347826087, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24665243, Length=189, Percent_Identity=28.042328042328, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI17737361, Length=223, Percent_Identity=30.4932735426009, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI221331218, Length=189, Percent_Identity=28.042328042328, Blast_Score=72, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24648693, Length=200, Percent_Identity=29, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355889, Length=200, Percent_Identity=29, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24665247, Length=193, Percent_Identity=28.4974093264249, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221331216, Length=193, Percent_Identity=28.4974093264249, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21355631, Length=169, Percent_Identity=26.6272189349112, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221510726, Length=184, Percent_Identity=28.804347826087, Blast_Score=69, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24641388, Length=234, Percent_Identity=29.0598290598291, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24644339, Length=187, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281364494, Length=236, Percent_Identity=27.5423728813559, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28571526, Length=181, Percent_Identity=29.2817679558011, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24649181, Length=218, Percent_Identity=24.3119266055046, Blast_Score=65, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37830; Mature: 37699

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARRRSGEARREVVVITGASAGVGRAVAHRFARSGAAVALIARDQAALEETKAEVEAEGG
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCC
HAMVLPLDLADSDAVFAAARDIEEELGPIDVWINNAMATIFSPLSEIRPEEFRRVTETTY
EEEEEEECCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LGYVHGTMAALQHMRRRNRGVIVQVGSALSYRGIPLQSAYCGAKHAIRGFTDSLRCELIH
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHCCHHHHHHCCCHHHHHHHHH
ERSRIKLTTVHLPAVNTPQFDWARTHLANEPRPVAPVFQPEVAAEAIFDASRNPRREVWL
CCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEE
GSSTAQVILGNALAPWLLDRYLARVCYEGQQRQRQLPRGRADNLFHPVHEPHSTHGSFDK
CCCCHHHEECCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
EASSSALAFSENTLRIAAAVAGLGAAMIVGVLARGALSARSFPRRR
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ARRRSGEARREVVVITGASAGVGRAVAHRFARSGAAVALIARDQAALEETKAEVEAEGG
CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCC
HAMVLPLDLADSDAVFAAARDIEEELGPIDVWINNAMATIFSPLSEIRPEEFRRVTETTY
EEEEEEECCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LGYVHGTMAALQHMRRRNRGVIVQVGSALSYRGIPLQSAYCGAKHAIRGFTDSLRCELIH
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHCCHHHHHHCCCHHHHHHHHH
ERSRIKLTTVHLPAVNTPQFDWARTHLANEPRPVAPVFQPEVAAEAIFDASRNPRREVWL
CCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEE
GSSTAQVILGNALAPWLLDRYLARVCYEGQQRQRQLPRGRADNLFHPVHEPHSTHGSFDK
CCCCHHHEECCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
EASSSALAFSENTLRIAAAVAGLGAAMIVGVLARGALSARSFPRRR
CCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]