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The map label for this gene is yliC [C]

Identifier: 110635960

GI number: 110635960

Start: 3925288

End: 3926229

Strand: Reverse

Name: yliC [C]

Synonym: Meso_3634

Alternate gene names: 110635960

Gene position: 3926229-3925288 (Counterclockwise)

Preceding gene: 110635961

Following gene: 110635959

Centisome position: 88.98

GC content: 64.12

Gene sequence:

>942_bases
ATGACGGAGATGATCATCCGCAGGGTCGGGCTCCTCGCCCTCATCCTGTTTGCCGTGTCGTTCATGACGTTCATGATCGT
GAACGTGCTGCCTGGTGACGTGGCGGCGGTCGTTCTCGGCGACGGTGCGAGTCCGGAACAGGTCCATCTCCTGCGCGAGA
AGCTCGGGCTCAACGAGCCCGTGCTTACCCGTTTCGTCAGTTGGCTGGGCGACATGCTGCGCGGCGACTTCGGCGTGTCG
CTGCTCTACGGCCAGCCCATAAAGCCTATGCTGGCGACGCGCCTCTACAACTCGCTCGTACTCGCCTTCCTGGCCCTGGT
CCTTTCAGTGCCGGTCGCAATCCTGCTCGGCACGGTCACCGCGATGAAGCGCGGTTCCTGGATCGACAGGATCATCTCGT
CGCTGACGGCGGTCACCTTCGCGCTGCCGGAATTCGTCAAGGGCCTCGCGCTGATTCTGGTCTTCGGCATCTGGCTGGAG
GTGCTGCCCGGCTCGAGCCTGATCGAGGCCGGCCGCCACCCCTTGTCGCAGCCGCTGATCCTGGTGTTGCCGGTGCTCAC
CGTGGCCATCGGCATGCAACCCTATTTCGTGCAGATCACCCGCGCGGGCATGATTGAGGCCTTCCGGAGCGACTATGTGC
GTACTGCGGTGCTCAAGGGCCTGCCGCCACATGTGGTGGCGCTCAAGCACGCACTGCGCAATGGCGTGCTGCCCGCCGTC
GCCGTCATTGGCATGACGCTGGGCAACGCACTTGGAGGGCTCGTCGTCGTCGAGACGGTCTTCTCCTACCCCGGCATCGG
ACAGCTCATGGTCAGCGCCATATCGGCGCGCGACGTGCCTATCATTCAGTCGACGGTGATGATTGTCGCGGCCGCCTACG
CCGTCGGCAACCTTCTGGCCGACATCGTCTCCATCGCGCTCAACCCGCGACTGCGATACTGA

Upstream 100 bases:

>100_bases
CGAGCGGGTGCAGGCTTACACGCCGCCGACCTACGACATCATCGACTTCCGCGAAGTCTGGCTGTCGTAACTCGATGCCA
TCCTGTTCCGGGCCGATGTC

Downstream 100 bases:

>100_bases
CCGAGGACGCAGATCATGCAAAACGCTTCTGCCAGCGCTTCCAGCCAGATCCCTCCCCTCCGCCGCTATCGGCTGCGCCC
GGTTGACCTTGTGCTCGGGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MTEMIIRRVGLLALILFAVSFMTFMIVNVLPGDVAAVVLGDGASPEQVHLLREKLGLNEPVLTRFVSWLGDMLRGDFGVS
LLYGQPIKPMLATRLYNSLVLAFLALVLSVPVAILLGTVTAMKRGSWIDRIISSLTAVTFALPEFVKGLALILVFGIWLE
VLPGSSLIEAGRHPLSQPLILVLPVLTVAIGMQPYFVQITRAGMIEAFRSDYVRTAVLKGLPPHVVALKHALRNGVLPAV
AVIGMTLGNALGGLVVVETVFSYPGIGQLMVSAISARDVPIIQSTVMIVAAAYAVGNLLADIVSIALNPRLRY

Sequences:

>Translated_313_residues
MTEMIIRRVGLLALILFAVSFMTFMIVNVLPGDVAAVVLGDGASPEQVHLLREKLGLNEPVLTRFVSWLGDMLRGDFGVS
LLYGQPIKPMLATRLYNSLVLAFLALVLSVPVAILLGTVTAMKRGSWIDRIISSLTAVTFALPEFVKGLALILVFGIWLE
VLPGSSLIEAGRHPLSQPLILVLPVLTVAIGMQPYFVQITRAGMIEAFRSDYVRTAVLKGLPPHVVALKHALRNGVLPAV
AVIGMTLGNALGGLVVVETVFSYPGIGQLMVSAISARDVPIIQSTVMIVAAAYAVGNLLADIVSIALNPRLRY
>Mature_312_residues
TEMIIRRVGLLALILFAVSFMTFMIVNVLPGDVAAVVLGDGASPEQVHLLREKLGLNEPVLTRFVSWLGDMLRGDFGVSL
LYGQPIKPMLATRLYNSLVLAFLALVLSVPVAILLGTVTAMKRGSWIDRIISSLTAVTFALPEFVKGLALILVFGIWLEV
LPGSSLIEAGRHPLSQPLILVLPVLTVAIGMQPYFVQITRAGMIEAFRSDYVRTAVLKGLPPHVVALKHALRNGVLPAVA
VIGMTLGNALGGLVVVETVFSYPGIGQLMVSAISARDVPIIQSTVMIVAAAYAVGNLLADIVSIALNPRLRY

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=313, Percent_Identity=33.2268370607029, Blast_Score=194, Evalue=8e-51,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=30.5637982195846, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1787761, Length=326, Percent_Identity=32.5153374233129, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=29.5238095238095, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=28.5714285714286, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=27.9850746268657, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1788504, Length=284, Percent_Identity=27.4647887323944, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33511; Mature: 33380

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEMIIRRVGLLALILFAVSFMTFMIVNVLPGDVAAVVLGDGASPEQVHLLREKLGLNEP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCH
VLTRFVSWLGDMLRGDFGVSLLYGQPIKPMLATRLYNSLVLAFLALVLSVPVAILLGTVT
HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMKRGSWIDRIISSLTAVTFALPEFVKGLALILVFGIWLEVLPGSSLIEAGRHPLSQPLI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHH
LVLPVLTVAIGMQPYFVQITRAGMIEAFRSDYVRTAVLKGLPPHVVALKHALRNGVLPAV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHH
AVIGMTLGNALGGLVVVETVFSYPGIGQLMVSAISARDVPIIQSTVMIVAAAYAVGNLLA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DIVSIALNPRLRY
HHHHHHHCCCCCC
>Mature Secondary Structure 
TEMIIRRVGLLALILFAVSFMTFMIVNVLPGDVAAVVLGDGASPEQVHLLREKLGLNEP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCH
VLTRFVSWLGDMLRGDFGVSLLYGQPIKPMLATRLYNSLVLAFLALVLSVPVAILLGTVT
HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMKRGSWIDRIISSLTAVTFALPEFVKGLALILVFGIWLEVLPGSSLIEAGRHPLSQPLI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHH
LVLPVLTVAIGMQPYFVQITRAGMIEAFRSDYVRTAVLKGLPPHVVALKHALRNGVLPAV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHH
AVIGMTLGNALGGLVVVETVFSYPGIGQLMVSAISARDVPIIQSTVMIVAAAYAVGNLLA
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
DIVSIALNPRLRY
HHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]