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The map label for this gene is yliD [C]

Identifier: 110635959

GI number: 110635959

Start: 3924406

End: 3925272

Strand: Reverse

Name: yliD [C]

Synonym: Meso_3633

Alternate gene names: 110635959

Gene position: 3925272-3924406 (Counterclockwise)

Preceding gene: 110635960

Following gene: 110635958

Centisome position: 88.96

GC content: 65.86

Gene sequence:

>867_bases
ATGCAAAACGCTTCTGCCAGCGCTTCCAGCCAGATCCCTCCCCTCCGCCGCTATCGGCTGCGCCCGGTTGACCTTGTGCT
CGGGCCGGTCATCCTGGTGGTGTTCTTGATGCTGCTGGTGCCCGGCTGGATCGCCCCCGGCAGTCCGACCGAGTTCGACC
CGATGGCATCGCTCATCCCCCCGGGCGGGGATTACCTCCTCGGCACCGACGAGTTCGGCCGAGACGTGTACACGCGCATA
GTCCACGGCGCCCGCCCGACGCTCATCGTCGCTTTCGCCGGCGCGGTGGTCGGCGTCATCCTGGGCACACTCACCGGCAT
GCTCGCGGGCTATGCCGGCGGACGAGTCGACGAGACATTGATGCGCTTTATGGATGCGTTGATGTCGTTTCCAACACTGA
TCCTCGCCACGCTCATCGTCGTGATGCTCGGTTCGAACCCGGTCAACGTGGTCGCCGCCCTGGCGGTGGTATTCTGGCCC
CGCTCGGCGCGCATCGTACGGGCGGTGGCGATGGACGTCGCGCGGCGCGCTTTCATCGAGGCCGCCTGGGTGCGCGGCGA
GAGCCATCTGTTCATCCTGTTTCGGGAGCTTCTGCCGAGCGTGATGAACGTTGCGGTAATCGATCTCAGCCTGCGCATCA
CCTATGCGACCATGCTCTCGGCTTCGCTGTCCTATCTCGGTGTGGGCGTCCATCCCCCGACACCGGCCTGGGGCCTCATG
GTCAAGGAGGGGCAGCAATTCATCCAGTTCGCCAGCTGGCTGGTGGTGGTGCCCTGCACGACGATCGCGATCGTGGCGGT
GACTTGCGTGCTGCTCGGCGAACGCTTGCGCGAGCTGCTCGCGCCCGCCCACCGGGGGGAACAATGA

Upstream 100 bases:

>100_bases
GATGATTGTCGCGGCCGCCTACGCCGTCGGCAACCTTCTGGCCGACATCGTCTCCATCGCGCTCAACCCGCGACTGCGAT
ACTGACCGAGGACGCAGATC

Downstream 100 bases:

>100_bases
TACAGCAGCGCCTGCCAACCGGCACGCCGATCCCCCTGCCCGACGCCACCCTTTGCGTGGACGGGCTCAGCATCAGCTAT
GGCGCCGCCAAGGTCGTCAG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MQNASASASSQIPPLRRYRLRPVDLVLGPVILVVFLMLLVPGWIAPGSPTEFDPMASLIPPGGDYLLGTDEFGRDVYTRI
VHGARPTLIVAFAGAVVGVILGTLTGMLAGYAGGRVDETLMRFMDALMSFPTLILATLIVVMLGSNPVNVVAALAVVFWP
RSARIVRAVAMDVARRAFIEAAWVRGESHLFILFRELLPSVMNVAVIDLSLRITYATMLSASLSYLGVGVHPPTPAWGLM
VKEGQQFIQFASWLVVVPCTTIAIVAVTCVLLGERLRELLAPAHRGEQ

Sequences:

>Translated_288_residues
MQNASASASSQIPPLRRYRLRPVDLVLGPVILVVFLMLLVPGWIAPGSPTEFDPMASLIPPGGDYLLGTDEFGRDVYTRI
VHGARPTLIVAFAGAVVGVILGTLTGMLAGYAGGRVDETLMRFMDALMSFPTLILATLIVVMLGSNPVNVVAALAVVFWP
RSARIVRAVAMDVARRAFIEAAWVRGESHLFILFRELLPSVMNVAVIDLSLRITYATMLSASLSYLGVGVHPPTPAWGLM
VKEGQQFIQFASWLVVVPCTTIAIVAVTCVLLGERLRELLAPAHRGEQ
>Mature_288_residues
MQNASASASSQIPPLRRYRLRPVDLVLGPVILVVFLMLLVPGWIAPGSPTEFDPMASLIPPGGDYLLGTDEFGRDVYTRI
VHGARPTLIVAFAGAVVGVILGTLTGMLAGYAGGRVDETLMRFMDALMSFPTLILATLIVVMLGSNPVNVVAALAVVFWP
RSARIVRAVAMDVARRAFIEAAWVRGESHLFILFRELLPSVMNVAVIDLSLRITYATMLSASLSYLGVGVHPPTPAWGLM
VKEGQQFIQFASWLVVVPCTTIAIVAVTCVLLGERLRELLAPAHRGEQ

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=272, Percent_Identity=33.4558823529412, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1787760, Length=267, Percent_Identity=30.3370786516854, Blast_Score=154, Evalue=9e-39,
Organism=Escherichia coli, GI1789964, Length=250, Percent_Identity=36, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1789889, Length=240, Percent_Identity=32.5, Blast_Score=130, Evalue=9e-32,
Organism=Escherichia coli, GI1787498, Length=238, Percent_Identity=34.453781512605, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787549, Length=243, Percent_Identity=29.6296296296296, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=28.8888888888889, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31059; Mature: 31059

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNASASASSQIPPLRRYRLRPVDLVLGPVILVVFLMLLVPGWIAPGSPTEFDPMASLIP
CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCC
PGGDYLLGTDEFGRDVYTRIVHGARPTLIVAFAGAVVGVILGTLTGMLAGYAGGRVDETL
CCCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
MRFMDALMSFPTLILATLIVVMLGSNPVNVVAALAVVFWPRSARIVRAVAMDVARRAFIE
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AAWVRGESHLFILFRELLPSVMNVAVIDLSLRITYATMLSASLSYLGVGVHPPTPAWGLM
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
VKEGQQFIQFASWLVVVPCTTIAIVAVTCVLLGERLRELLAPAHRGEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQNASASASSQIPPLRRYRLRPVDLVLGPVILVVFLMLLVPGWIAPGSPTEFDPMASLIP
CCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCC
PGGDYLLGTDEFGRDVYTRIVHGARPTLIVAFAGAVVGVILGTLTGMLAGYAGGRVDETL
CCCCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
MRFMDALMSFPTLILATLIVVMLGSNPVNVVAALAVVFWPRSARIVRAVAMDVARRAFIE
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AAWVRGESHLFILFRELLPSVMNVAVIDLSLRITYATMLSASLSYLGVGVHPPTPAWGLM
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
VKEGQQFIQFASWLVVVPCTTIAIVAVTCVLLGERLRELLAPAHRGEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA