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The map label for this gene is yciR [C]

Identifier: 110635931

GI number: 110635931

Start: 3887155

End: 3889098

Strand: Reverse

Name: yciR [C]

Synonym: Meso_3605

Alternate gene names: 110635931

Gene position: 3889098-3887155 (Counterclockwise)

Preceding gene: 110635932

Following gene: 110635928

Centisome position: 88.14

GC content: 58.18

Gene sequence:

>1944_bases
ATGGGGGATAAAAAGCAAAGCCCAGCGCCCTTGCGGCCGGAAGTCTTGAAGCTCAGAATCCGAGCCGACCAACTCAACGA
CATCCGCCGTGGCATTTTCTTTTCGAACCCGATCAGCAGCCTCCTCTCCGCCCTGATCCTTGCGGCACATGTTGCGGCCG
GTCATGCCTTTGTTGCCGTACTGGTGTGGTTCCTCGCCATTAACGCCATCAATGGCGCGCGGATTATATGCGCGTTCAGG
CAATCACGAATTTCCAAGCAGGGGTGTGAAGATCTGTCCAAGGTCATGGCGCATCTTGGTCAGTTCAAGCTCCTCGCTTT
TTTGTCCGGCATCAATTGGGCTTTTCTGGCCCTGCTGACTGAGGGATATACAACCCCCAAATCAGAGCTCGATCTGATTA
TTCTGGCGGGAGTATCCGCCGGAGCTGTGGTGTATGGCGCTCCATACGCGGTGATTTCAATCAGCTTCATGCTGCCGCCG
TTGCTCGTCGTCATCGCATGCTTCCTCTACCAAGGTGGCTTCGAAAGCTACCTGATGGTTCTTGCAGTGGCACTCTTCAT
CGCCGGATTGATCCGTGGCGCAATGGTGGGCCAGGCCCGGTTCCTGGAAGGAAGCCGCCTCAAGCACGAGGCAAGGCAGA
TCGCGGCCGAGATGGAGCAAAGCTCGCGCGAGGATCCCTTAAGCGGCCTTCTAAACAGGCGTGGCCTCGAACACGCGATA
GAGGGGCTTGCCGAAACCGATGGTCCGTTTGTAACGATGCTTATCGATCTCGACGGCTTCAAGTCCGTCAACGATACTTA
CGGCCACAAAATTGGAGACGATCTGCTTGTCAGGATCGCGCATCGGGTGGGCGAGAGCGCTCCGCCGGGGGCGATCCTGT
CGCGCATCGGCGGAGATGAATTCGTCCTGCTCTACCCCGAGCGCGCAGCGCCGCATCCCCCTGGCCAGCTTGCGCTGGAT
CTCATCGCGGCCATCGCGAGCCCCTATTTTCTCGTCGCTTCCGTTCGCATCGGCGCGTGCATAGGCATTTATCGTTCGCA
GAAGCCGAGTCTCACCGAAATGCTGCTCCGGGCCGACATCGCGCTTTATGCTGCGAAGGGACGCGGGCGGAATGAATTTT
GCGAGTTCGACGAAAACCTGCAGCAGGAGCTTGAGCGCCGCCAGTGCATCGAACGGGATCTCATTATCGCGATCGAGCAA
GGAGAGCTCGGCATCTGGTTTCAGCCAATCGTCACGCTGAAGACGGCAGAGATTGTCGGCTTTGAAGCGTTGCTGCGCTG
GCGCCATCCCACCCATGGTGAAATTTCCCCGCCCGAGATTGTGGATGCCGCGCGGGAGACGGGCCTGCTCTTCCAACTTA
CCGAGACGGTGTTCCGCAACTGCTGTGTCATGATGGAGCTGCTGAAAAAGGCAGGGCGCAGCGACATTCGCGTGGCAATG
AATTTCTCGCCGCGCGAACTGGAAAACAGCAGCGTCGATGAAATGATCATGACCGGGCTGACGGAAAGAGACCTTCCCGT
TTCGATGTTTGAAATCGAGATCACCGAGGAAGCGGCCTTGGATCGCTATCGCGTGCACGAGCGGCTGGGCCGCCTCTCCG
GCTTCGGCATATCCATCGCGCTCGACGATTTCGGTACCGGCTTCTCCACGCTGGCCTCGCTGAAGGACATACGAATCCGC
AAGGTGAAGATCGACAAGGAGTTCATTTGCGGCATCGCGAAATCCCGGGATGACCAGCTTCTTGTCAAAGCGGTGATCGA
CCTTGGCCGAGCTTTCGACATCGAAGTCATGGCGGAAGGGGTGGAAACTGAGGAAGACCGCCGGGTCCTACAGGTTCTCG
GCTGCTGTACCGCGCAAGGGTTTCTGTTTGCACGCGCTCTGCCCATCAATGAGGCTGTCGAGATGGCGCTCGGAAAGGCC
GCCGCTGGTAAAGGAAGCGGTTGA

Upstream 100 bases:

>100_bases
CGTTTAGAGACTGGGTTAAAACTGGCTTAACTTTGTCTGTTGGATAATCCTGGCTAGGCAAGTGCCGCGGCCGCTGGTTG
GGGGCAAGGTCAAATTCCGG

Downstream 100 bases:

>100_bases
CGGCAAGTCACCAATGCGGAGGTTTCGTAACCGGGACCTCCGGTGCCGTCCGCTCTTCGAGGGCTAAAAAGCGCTCCGTC
AGGAGGTCGAGCTTCTTTTG

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 647; Mature: 646

Protein sequence:

>647_residues
MGDKKQSPAPLRPEVLKLRIRADQLNDIRRGIFFSNPISSLLSALILAAHVAAGHAFVAVLVWFLAINAINGARIICAFR
QSRISKQGCEDLSKVMAHLGQFKLLAFLSGINWAFLALLTEGYTTPKSELDLIILAGVSAGAVVYGAPYAVISISFMLPP
LLVVIACFLYQGGFESYLMVLAVALFIAGLIRGAMVGQARFLEGSRLKHEARQIAAEMEQSSREDPLSGLLNRRGLEHAI
EGLAETDGPFVTMLIDLDGFKSVNDTYGHKIGDDLLVRIAHRVGESAPPGAILSRIGGDEFVLLYPERAAPHPPGQLALD
LIAAIASPYFLVASVRIGACIGIYRSQKPSLTEMLLRADIALYAAKGRGRNEFCEFDENLQQELERRQCIERDLIIAIEQ
GELGIWFQPIVTLKTAEIVGFEALLRWRHPTHGEISPPEIVDAARETGLLFQLTETVFRNCCVMMELLKKAGRSDIRVAM
NFSPRELENSSVDEMIMTGLTERDLPVSMFEIEITEEAALDRYRVHERLGRLSGFGISIALDDFGTGFSTLASLKDIRIR
KVKIDKEFICGIAKSRDDQLLVKAVIDLGRAFDIEVMAEGVETEEDRRVLQVLGCCTAQGFLFARALPINEAVEMALGKA
AAGKGSG

Sequences:

>Translated_647_residues
MGDKKQSPAPLRPEVLKLRIRADQLNDIRRGIFFSNPISSLLSALILAAHVAAGHAFVAVLVWFLAINAINGARIICAFR
QSRISKQGCEDLSKVMAHLGQFKLLAFLSGINWAFLALLTEGYTTPKSELDLIILAGVSAGAVVYGAPYAVISISFMLPP
LLVVIACFLYQGGFESYLMVLAVALFIAGLIRGAMVGQARFLEGSRLKHEARQIAAEMEQSSREDPLSGLLNRRGLEHAI
EGLAETDGPFVTMLIDLDGFKSVNDTYGHKIGDDLLVRIAHRVGESAPPGAILSRIGGDEFVLLYPERAAPHPPGQLALD
LIAAIASPYFLVASVRIGACIGIYRSQKPSLTEMLLRADIALYAAKGRGRNEFCEFDENLQQELERRQCIERDLIIAIEQ
GELGIWFQPIVTLKTAEIVGFEALLRWRHPTHGEISPPEIVDAARETGLLFQLTETVFRNCCVMMELLKKAGRSDIRVAM
NFSPRELENSSVDEMIMTGLTERDLPVSMFEIEITEEAALDRYRVHERLGRLSGFGISIALDDFGTGFSTLASLKDIRIR
KVKIDKEFICGIAKSRDDQLLVKAVIDLGRAFDIEVMAEGVETEEDRRVLQVLGCCTAQGFLFARALPINEAVEMALGKA
AAGKGSG
>Mature_646_residues
GDKKQSPAPLRPEVLKLRIRADQLNDIRRGIFFSNPISSLLSALILAAHVAAGHAFVAVLVWFLAINAINGARIICAFRQ
SRISKQGCEDLSKVMAHLGQFKLLAFLSGINWAFLALLTEGYTTPKSELDLIILAGVSAGAVVYGAPYAVISISFMLPPL
LVVIACFLYQGGFESYLMVLAVALFIAGLIRGAMVGQARFLEGSRLKHEARQIAAEMEQSSREDPLSGLLNRRGLEHAIE
GLAETDGPFVTMLIDLDGFKSVNDTYGHKIGDDLLVRIAHRVGESAPPGAILSRIGGDEFVLLYPERAAPHPPGQLALDL
IAAIASPYFLVASVRIGACIGIYRSQKPSLTEMLLRADIALYAAKGRGRNEFCEFDENLQQELERRQCIERDLIIAIEQG
ELGIWFQPIVTLKTAEIVGFEALLRWRHPTHGEISPPEIVDAARETGLLFQLTETVFRNCCVMMELLKKAGRSDIRVAMN
FSPRELENSSVDEMIMTGLTERDLPVSMFEIEITEEAALDRYRVHERLGRLSGFGISIALDDFGTGFSTLASLKDIRIRK
VKIDKEFICGIAKSRDDQLLVKAVIDLGRAFDIEVMAEGVETEEDRRVLQVLGCCTAQGFLFARALPINEAVEMALGKAA
AGKGSG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=425, Percent_Identity=29.8823529411765, Blast_Score=189, Evalue=7e-49,
Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=28.0092592592593, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI226510982, Length=420, Percent_Identity=26.1904761904762, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=32.3770491803279, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1787055, Length=426, Percent_Identity=27.2300469483568, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=31.3807531380753, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=31.5789473684211, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=30.1960784313725, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=28.8617886178862, Blast_Score=111, Evalue=2e-25,
Organism=Escherichia coli, GI1786507, Length=323, Percent_Identity=24.7678018575851, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1788849, Length=515, Percent_Identity=23.8834951456311, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI87082096, Length=443, Percent_Identity=24.3792325056433, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=34.6590909090909, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1787262, Length=277, Percent_Identity=27.7978339350181, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI1788381, Length=433, Percent_Identity=23.7875288683603, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787410, Length=222, Percent_Identity=27.4774774774775, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=32.2784810126582, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787056, Length=156, Percent_Identity=28.8461538461538, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786584, Length=189, Percent_Identity=25.3968253968254, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788956, Length=174, Percent_Identity=28.735632183908, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788085, Length=172, Percent_Identity=28.4883720930233, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787802, Length=156, Percent_Identity=28.2051282051282, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI87081977, Length=195, Percent_Identity=31.2820512820513, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=32.3170731707317, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 70912; Mature: 70781

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDKKQSPAPLRPEVLKLRIRADQLNDIRRGIFFSNPISSLLSALILAAHVAAGHAFVAV
CCCCCCCCCCCCHHHHEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVWFLAINAINGARIICAFRQSRISKQGCEDLSKVMAHLGQFKLLAFLSGINWAFLALLT
HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
EGYTTPKSELDLIILAGVSAGAVVYGAPYAVISISFMLPPLLVVIACFLYQGGFESYLMV
CCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LAVALFIAGLIRGAMVGQARFLEGSRLKHEARQIAAEMEQSSREDPLSGLLNRRGLEHAI
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHH
EGLAETDGPFVTMLIDLDGFKSVNDTYGHKIGDDLLVRIAHRVGESAPPGAILSRIGGDE
HHHHCCCCCEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCC
FVLLYPERAAPHPPGQLALDLIAAIASPYFLVASVRIGACIGIYRSQKPSLTEMLLRADI
EEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ALYAAKGRGRNEFCEFDENLQQELERRQCIERDLIIAIEQGELGIWFQPIVTLKTAEIVG
HHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHHHHH
FEALLRWRHPTHGEISPPEIVDAARETGLLFQLTETVFRNCCVMMELLKKAGRSDIRVAM
HHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
NFSPRELENSSVDEMIMTGLTERDLPVSMFEIEITEEAALDRYRVHERLGRLSGFGISIA
CCCHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEE
LDDFGTGFSTLASLKDIRIRKVKIDKEFICGIAKSRDDQLLVKAVIDLGRAFDIEVMAEG
ECCCCCCHHHHHHHHHCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCC
VETEEDRRVLQVLGCCTAQGFLFARALPINEAVEMALGKAAAGKGSG
CCCHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GDKKQSPAPLRPEVLKLRIRADQLNDIRRGIFFSNPISSLLSALILAAHVAAGHAFVAV
CCCCCCCCCCCHHHHEEEECHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVWFLAINAINGARIICAFRQSRISKQGCEDLSKVMAHLGQFKLLAFLSGINWAFLALLT
HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
EGYTTPKSELDLIILAGVSAGAVVYGAPYAVISISFMLPPLLVVIACFLYQGGFESYLMV
CCCCCCCCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LAVALFIAGLIRGAMVGQARFLEGSRLKHEARQIAAEMEQSSREDPLSGLLNRRGLEHAI
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHH
EGLAETDGPFVTMLIDLDGFKSVNDTYGHKIGDDLLVRIAHRVGESAPPGAILSRIGGDE
HHHHCCCCCEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCCCC
FVLLYPERAAPHPPGQLALDLIAAIASPYFLVASVRIGACIGIYRSQKPSLTEMLLRADI
EEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
ALYAAKGRGRNEFCEFDENLQQELERRQCIERDLIIAIEQGELGIWFQPIVTLKTAEIVG
HHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEHHHHHHHHHHHHH
FEALLRWRHPTHGEISPPEIVDAARETGLLFQLTETVFRNCCVMMELLKKAGRSDIRVAM
HHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
NFSPRELENSSVDEMIMTGLTERDLPVSMFEIEITEEAALDRYRVHERLGRLSGFGISIA
CCCHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCEEEEE
LDDFGTGFSTLASLKDIRIRKVKIDKEFICGIAKSRDDQLLVKAVIDLGRAFDIEVMAEG
ECCCCCCHHHHHHHHHCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHCC
VETEEDRRVLQVLGCCTAQGFLFARALPINEAVEMALGKAAAGKGSG
CCCHHHHHHHHHHHHHHHCHHHHHCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]