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The map label for this gene is xylR [H]

Identifier: 110635887

GI number: 110635887

Start: 3834291

End: 3835415

Strand: Reverse

Name: xylR [H]

Synonym: Meso_3560

Alternate gene names: 110635887

Gene position: 3835415-3834291 (Counterclockwise)

Preceding gene: 110635893

Following gene: 110635886

Centisome position: 86.92

GC content: 62.58

Gene sequence:

>1125_bases
ATGACGGAAAGTGCGAAGGCTGTCCTTCGACGTCTCGCCTATGAGGGGCCTTCCACACGTCCTCAGATCGGTGCTGCGCT
TGGCCTTTCGCGTCCAACGATGTCGGCCGCGGTCGCGGAACTGGAAAGGCTCGGCTATGTGGATCTGACGGGCGCGGTGC
AGGGGACGCTTGGTCGTAGCGCTGCGCAGTACCGGGTCGGCCGCAAGGCTGGGCACGTAATTGCGGTAGATGCTGGCTCA
ACCCACGTGCGCCTGCGGGTCGCAACGCTGGACGGAAGGCTGCTGCAAAGCAGGGTTTGCAGCCTCTCAGGCAGCCAGTT
CGCGCTCACTCCCGAGATCAGCCGGACAGTTGCACAGGAAGTGGCCGCGGCGATCGCGGAGAATGATCGAGACTGGGGAC
CTCTACGCGCCCTCGGTATCGCTATACCGACCCGAGTGGTTGGTGCGGAAGGCGACGCGATCAGCACGAACCAGAACATG
ATCTTCAGCGAATTCGAACCACCCGCTGGGATTGATGTGCTGTTGGTCAACAACGTTAATTGCGCAGCCGTGGCCGAACG
TCAATTCGGAGCAGCACGAGGTCGTGATACCTTTGCCTACGTCCAGATAGGCCTCAAGATCGGTATGGGGCTGGTGCTTG
GCGGAAAACTAATTGCCGGCGCGACCGGATCTGCCGGCGAAATCGGACATGTGAGCTTCCCCTTCGGCCCGGGCCTCTTT
CCCGAGGCGGGTGCCGTGGAACGCTATCTCGGTACGGAATCGCTGATCGCGCGCGTCCGTGCCCATTGGCCCCGAGCCTG
CGGGGAGCCGCCCGCAACCACGAACGAATTATTGGCCCTCGCGGAACAGGGAAATACGGCCGCAATTGAACACGTGGAGC
AACACGCTGCTGATATTGGCGCCCTGGTGGCGACCTGCGTGAGCGTGGTCGATCCCGGGTTGGTGGTCTTGGGCGGCGGC
ATGGGCGCCTCGCCGCTGCTGCTTCCCAAAGTGCAGGAGGTGGTGGGTCGCTTGACATATCCCGTCGAGGTCGCAACCAC
CTTGCTAGGTGTCGATGCAACCGTGCTCGGCATCGAGAAGCTCGCGACCGAACAAGCACTCTCGCGCCTGCTCGGCCAAA
TCTAG

Upstream 100 bases:

>100_bases
GAGGTGTTGTCTTTACGAAACCCGGCAAGAATGCGAAAGTTAATTGAAGCAACAAAATGGTGCGCGCGTGCATAAAGTAG
TTCCAAAGCAGCTTCCTTCG

Downstream 100 bases:

>100_bases
CCCTGCCTTCAATACGCGTTCGGCGACCGAGCGCATTTGCCATTGACTCTTGCCGCCAGATTTTATTTGTTAAGGTGCCT
AACATAGAACAACGGCCCCA

Product: ROK domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MTESAKAVLRRLAYEGPSTRPQIGAALGLSRPTMSAAVAELERLGYVDLTGAVQGTLGRSAAQYRVGRKAGHVIAVDAGS
THVRLRVATLDGRLLQSRVCSLSGSQFALTPEISRTVAQEVAAAIAENDRDWGPLRALGIAIPTRVVGAEGDAISTNQNM
IFSEFEPPAGIDVLLVNNVNCAAVAERQFGAARGRDTFAYVQIGLKIGMGLVLGGKLIAGATGSAGEIGHVSFPFGPGLF
PEAGAVERYLGTESLIARVRAHWPRACGEPPATTNELLALAEQGNTAAIEHVEQHAADIGALVATCVSVVDPGLVVLGGG
MGASPLLLPKVQEVVGRLTYPVEVATTLLGVDATVLGIEKLATEQALSRLLGQI

Sequences:

>Translated_374_residues
MTESAKAVLRRLAYEGPSTRPQIGAALGLSRPTMSAAVAELERLGYVDLTGAVQGTLGRSAAQYRVGRKAGHVIAVDAGS
THVRLRVATLDGRLLQSRVCSLSGSQFALTPEISRTVAQEVAAAIAENDRDWGPLRALGIAIPTRVVGAEGDAISTNQNM
IFSEFEPPAGIDVLLVNNVNCAAVAERQFGAARGRDTFAYVQIGLKIGMGLVLGGKLIAGATGSAGEIGHVSFPFGPGLF
PEAGAVERYLGTESLIARVRAHWPRACGEPPATTNELLALAEQGNTAAIEHVEQHAADIGALVATCVSVVDPGLVVLGGG
MGASPLLLPKVQEVVGRLTYPVEVATTLLGVDATVLGIEKLATEQALSRLLGQI
>Mature_373_residues
TESAKAVLRRLAYEGPSTRPQIGAALGLSRPTMSAAVAELERLGYVDLTGAVQGTLGRSAAQYRVGRKAGHVIAVDAGST
HVRLRVATLDGRLLQSRVCSLSGSQFALTPEISRTVAQEVAAAIAENDRDWGPLRALGIAIPTRVVGAEGDAISTNQNMI
FSEFEPPAGIDVLLVNNVNCAAVAERQFGAARGRDTFAYVQIGLKIGMGLVLGGKLIAGATGSAGEIGHVSFPFGPGLFP
EAGAVERYLGTESLIARVRAHWPRACGEPPATTNELLALAEQGNTAAIEHVEQHAADIGALVATCVSVVDPGLVVLGGGM
GASPLLLPKVQEVVGRLTYPVEVATTLLGVDATVLGIEKLATEQALSRLLGQI

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1787363, Length=239, Percent_Identity=26.3598326359833, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI87081733, Length=186, Percent_Identity=27.4193548387097, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 38718; Mature: 38587

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESAKAVLRRLAYEGPSTRPQIGAALGLSRPTMSAAVAELERLGYVDLTGAVQGTLGRS
CCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCEEECCHHHHHHCCH
AAQYRVGRKAGHVIAVDAGSTHVRLRVATLDGRLLQSRVCSLSGSQFALTPEISRTVAQE
HHHHHHCCCCCCEEEEECCCCEEEEEEEECCCHHHHHHHHHCCCCCEEECHHHHHHHHHH
VAAAIAENDRDWGPLRALGIAIPTRVVGAEGDAISTNQNMIFSEFEPPAGIDVLLVNNVN
HHHHHHCCCCCCCHHHHHHHHHCCEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCC
CAAVAERQFGAARGRDTFAYVQIGLKIGMGLVLGGKLIAGATGSAGEIGHVSFPFGPGLF
HHHHHHHHHCCCCCCCCEEEEEEHHHHCCCEEECCEEEECCCCCCCCCCEEECCCCCCCC
PEAGAVERYLGTESLIARVRAHWPRACGEPPATTNELLALAEQGNTAAIEHVEQHAADIG
CCCCHHHHHHCHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALVATCVSVVDPGLVVLGGGMGASPLLLPKVQEVVGRLTYPVEVATTLLGVDATVLGIEK
HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
LATEQALSRLLGQI
HHHHHHHHHHHHCC
>Mature Secondary Structure 
TESAKAVLRRLAYEGPSTRPQIGAALGLSRPTMSAAVAELERLGYVDLTGAVQGTLGRS
CCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCEEECCHHHHHHCCH
AAQYRVGRKAGHVIAVDAGSTHVRLRVATLDGRLLQSRVCSLSGSQFALTPEISRTVAQE
HHHHHHCCCCCCEEEEECCCCEEEEEEEECCCHHHHHHHHHCCCCCEEECHHHHHHHHHH
VAAAIAENDRDWGPLRALGIAIPTRVVGAEGDAISTNQNMIFSEFEPPAGIDVLLVNNVN
HHHHHHCCCCCCCHHHHHHHHHCCEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCC
CAAVAERQFGAARGRDTFAYVQIGLKIGMGLVLGGKLIAGATGSAGEIGHVSFPFGPGLF
HHHHHHHHHCCCCCCCCEEEEEEHHHHCCCEEECCEEEECCCCCCCCCCEEECCCCCCCC
PEAGAVERYLGTESLIARVRAHWPRACGEPPATTNELLALAEQGNTAAIEHVEQHAADIG
CCCCHHHHHHCHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
ALVATCVSVVDPGLVVLGGGMGASPLLLPKVQEVVGRLTYPVEVATTLLGVDATVLGIEK
HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
LATEQALSRLLGQI
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]