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The map label for this gene is dapF

Identifier: 110635719

GI number: 110635719

Start: 3665498

End: 3666379

Strand: Reverse

Name: dapF

Synonym: Meso_3391

Alternate gene names: 110635719

Gene position: 3666379-3665498 (Counterclockwise)

Preceding gene: 110635720

Following gene: 110635718

Centisome position: 83.09

GC content: 62.13

Gene sequence:

>882_bases
ATGGCGGAACTGGCGCAATTCGCGAAGATGAACGGGCTTGGCAATGCCATCATCGTTGCCGATATGCGCGGCAGGGCCGA
TCGCGTGCGCCCGGAGGCTGCGCAGCGCCTTGCCAGCGATCCCGCCACTCATTTCGATCAGATCATGGCGATCCATGATC
CGCGCCTTGAGGGCACGGAAAATTACATCGAGATCATCAATTCCGACGGCAGCGTGGCGCAAGCCTGCGGCAATGGCATG
CGCTGCGTCGTGCAGAGGCTCGCTGCGGAAACCGGCCGACCAAGCTTTACCTTTGAAACGATTGCTGGCGTGCTGAGTGC
AGAAGAGCACGCGAACGGCCTGATATCCGTCGATATGGGTAAGCCTCGTTTCGGCTGGCAGGATATTCCTCTTGCAGAAG
AATTCCACGACACGCGCAAGATTGAGCTGCAAGTCGGCCCCATCGACAAACCGGTGCTGCACTCGCCGTCCGTAGCCTCG
ATGGGCAATCCACACGCGATCTTCTGGGTCGAGGACGATCCATATTCCTATGATCTGGAACGCTTCGGGCCGATGCTCGA
AAACCACCCCATCTTTCCCGAGCGAGCCAATATCACCATTGCCCGCGTGGACTCGCCGGAGGAGCTGACCATGCGCACAT
GGGAGCGGGGCGCAGGCCTGACGCTCGCCTGCGGCTCGGCCGCTTGCGCGGCCGCCGTTTCGGCTGCGCGCACCGGGCGC
ACCGGGCGGGGCGTCAAGGTGAACCTGCCTGGCGGTTCGCTCGAAATACTCTGGCGCGACGATGACCATGTAATCATGAC
CGGACCGGCGGAATGGGAGTTCTCTGGCCGTTTTGATCCCGCTACCGGTGCTTGGGAGCGCGAGACGGAAGGGGCCGCCT
GA

Upstream 100 bases:

>100_bases
CTCGCCGTACTCGGCATCATAGCAATTGCCTGACGCCGTCTGGTAATTCTTGCCGCGATCCGCCATATAGGCCCCGAACC
CTGGATCGATCGGGACTCCT

Downstream 100 bases:

>100_bases
TGTCGGTCGATGTCCTGACCTTTGGCTGCCGGCTTAACGCATACGAATCCGAGGTGATCCGGCGCGAGGCCGAAGCTGCC
GGCCTCTCCGCGCTCGAAGG

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase

Number of amino acids: Translated: 293; Mature: 292

Protein sequence:

>293_residues
MAELAQFAKMNGLGNAIIVADMRGRADRVRPEAAQRLASDPATHFDQIMAIHDPRLEGTENYIEIINSDGSVAQACGNGM
RCVVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMGKPRFGWQDIPLAEEFHDTRKIELQVGPIDKPVLHSPSVAS
MGNPHAIFWVEDDPYSYDLERFGPMLENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGR
TGRGVKVNLPGGSLEILWRDDDHVIMTGPAEWEFSGRFDPATGAWERETEGAA

Sequences:

>Translated_293_residues
MAELAQFAKMNGLGNAIIVADMRGRADRVRPEAAQRLASDPATHFDQIMAIHDPRLEGTENYIEIINSDGSVAQACGNGM
RCVVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMGKPRFGWQDIPLAEEFHDTRKIELQVGPIDKPVLHSPSVAS
MGNPHAIFWVEDDPYSYDLERFGPMLENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGR
TGRGVKVNLPGGSLEILWRDDDHVIMTGPAEWEFSGRFDPATGAWERETEGAA
>Mature_292_residues
AELAQFAKMNGLGNAIIVADMRGRADRVRPEAAQRLASDPATHFDQIMAIHDPRLEGTENYIEIINSDGSVAQACGNGMR
CVVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMGKPRFGWQDIPLAEEFHDTRKIELQVGPIDKPVLHSPSVASM
GNPHAIFWVEDDPYSYDLERFGPMLENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGRT
GRGVKVNLPGGSLEILWRDDDHVIMTGPAEWEFSGRFDPATGAWERETEGAA

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family

Homologues:

Organism=Escherichia coli, GI87082334, Length=279, Percent_Identity=36.9175627240143, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPF_MESSB (Q11CW3)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_675927.1
- ProteinModelPortal:   Q11CW3
- SMR:   Q11CW3
- STRING:   Q11CW3
- GeneID:   4183128
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_3391
- NMPDR:   fig|266779.1.peg.1136
- eggNOG:   COG0253
- HOGENOM:   HBG399442
- OMA:   HTGIGFD
- PhylomeDB:   Q11CW3
- ProtClustDB:   PRK00450
- BioCyc:   MSP266779:MESO_3391-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00197
- InterPro:   IPR001653
- InterPro:   IPR018510
- TIGRFAMs:   TIGR00652

Pfam domain/function: PF01678 DAP_epimerase

EC number: =5.1.1.7

Molecular weight: Translated: 31881; Mature: 31750

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: ACT_SITE 76-76 ACT_SITE 224-224

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELAQFAKMNGLGNAIIVADMRGRADRVRPEAAQRLASDPATHFDQIMAIHDPRLEGTE
CCHHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
NYIEIINSDGSVAQACGNGMRCVVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMG
CEEEEECCCCHHHHHHCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCEEEEECC
KPRFGWQDIPLAEEFHDTRKIELQVGPIDKPVLHSPSVASMGNPHAIFWVEDDPYSYDLE
CCCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCHHCCCCCEEEEEEECCCCCCCHH
RFGPMLENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGR
HHCCHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCC
TGRGVKVNLPGGSLEILWRDDDHVIMTGPAEWEFSGRFDPATGAWERETEGAA
CCCCEEEECCCCCEEEEEECCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AELAQFAKMNGLGNAIIVADMRGRADRVRPEAAQRLASDPATHFDQIMAIHDPRLEGTE
CHHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
NYIEIINSDGSVAQACGNGMRCVVQRLAAETGRPSFTFETIAGVLSAEEHANGLISVDMG
CEEEEECCCCHHHHHHCCCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCEEEEECC
KPRFGWQDIPLAEEFHDTRKIELQVGPIDKPVLHSPSVASMGNPHAIFWVEDDPYSYDLE
CCCCCCCCCCCHHHHCCCEEEEEEECCCCCCCCCCCCHHCCCCCEEEEEEECCCCCCCHH
RFGPMLENHPIFPERANITIARVDSPEELTMRTWERGAGLTLACGSAACAAAVSAARTGR
HHCCHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCC
TGRGVKVNLPGGSLEILWRDDDHVIMTGPAEWEFSGRFDPATGAWERETEGAA
CCCCEEEECCCCCEEEEEECCCCEEEECCCCEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA