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The map label for this gene is 110635697

Identifier: 110635697

GI number: 110635697

Start: 3638415

End: 3639881

Strand: Reverse

Name: 110635697

Synonym: Meso_3369

Alternate gene names: NA

Gene position: 3639881-3638415 (Counterclockwise)

Preceding gene: 110635698

Following gene: 110635696

Centisome position: 82.49

GC content: 61.55

Gene sequence:

>1467_bases
ATGGAAGATCGCCATAAGACCGCAGGATCCGCCTCGGTCGTTCACCGAACGGCGAGTGTTCTGATCACCTTTTTTCTGGT
CCTAAGCGGCGGCTTCGTCGCTTCGAGCCCTAAGGCGCAGGAAACAGGCGGCACAGCCATTGTGCTGAGGCTGGAGGGCG
CCGTTAGTCCTGCTACGGCCGATTATGTGACCAATGGCCTGGAAATCGCCGCGGAACGCGAGGCACGCCTTGTGGTGCTG
CTGATAGACACTCCCGGAGGTCTTGATACCTCTATGCGCGAAATCATTCGCGCTATTCTGGCGTCTTCCGTCCCCGTTGC
CAGTTTCGTAGCGCCAAGCGGCGCGCGCGCCGCCAGCGCCGGCGCCTATATCCTCTATGCCAGTCATGTGGCCGCGATGG
CGCCAGGGACAAATGTCGGGGCCGCGACACCAATCGCGCTGGGAGGGGGATCGCCGTTCGGAGCAAACCCGGAAGAGGAA
CAGGAAGCGCAGGATTCAGCGGAGGAAGGCGGCGAGGATCGCGGCGGCCGACGCCAGTCACCGCGCAATGCCTCGGAGGA
GAAGGCCATCAACGATGCGGTCGCTTACATACGTGGTCTCGCCGAACTGCGCGGCCGTAATGCCGAATGGGCGGAAAGGG
CAGTGCGCGAGGCTGCCAGTCTGTCATCGGCCGCAGCGGCGCAGCAGGATGTCATCGACTTCACCGCCTCCTCCATCGAT
GATCTTATGAGAAAGGCAGACGGTCTCACCGTCCAGGTGGGCCAGTCACAGACCGTGCTGGAGACCTCGGGGCTGGTCCG
AGAGGCGATAGACCCGGACTGGCGCACGCGCTTGCTTTCAGTCATCACGGACCCGAATGTCGCACTCATCCTCATGATGA
TTGGCATTTATGGGCTGATCTTTGAATTCCTCAATCCGGGCACTTTCATACCGGGCACGATCGGCGGCATCAGCCTTTTG
CTCGGCCTTTATGCCCTCGCGGTTCTGCCGGTAAGCTATGCCGGCGTCGGCCTCATAATCCTGGGGGCGGCGCTCGTGCT
GGCTGAGGCCTTCGCTCCCTCGTTTGGCATTTTGGGCATCGGCGGGGCCGTTGCTTTTGTACTTGGGGCGACCATCCTTT
TCGATACCGAAATCCCGGGACTGGAAATCTATTGGCCCGTGCTCGGCGGCATTGCTATTGCCAGCCTCGCTTTCAGCCTC
CTCGTGGCGCGTCTTGCCATGGTTGCGCATCGCCGCACGGTGGCAACCGGCGCGGAGCAGATGATCGGCGCAAGAGGCAA
GGTGGACAGTTGGTCGAATGGCAGCGGCTATGTCCTCGTTCATGGCGAACGGTGGAAGGCTGTTTCGGCTGCCTCGCTTG
CAGCAGGCACGGAGATACGCGTTACCGGCCGCGACGGCCTTGTGCTGAAAGTAGCCGCTCTCGAACCGGAACATAGCGCT
TCCGAAGAAGGCAGGAGAAAACCATGA

Upstream 100 bases:

>100_bases
AGCTCAAGTCGTGACAGCGGGCAAGCCAGCGAAGGCGGCAGATGCGGGCCGCGAGCGGTAAGGCCTAGCCCGACCGGGCC
TGCCGCCTATATCCGCGGAT

Downstream 100 bases:

>100_bases
ACATGCTTGGCAATATCGGATTATATATTGTTCCGCTCGTCATCTTGCTGATCCTGCTCGCATCGGCGGTCAAGATCCTG
CGCGAATACGAACGTGGGGT

Product: hypothetical protein

Products: NA

Alternate protein names: Nodulation Efficiency Protein NfeD; Nodulation Efficiency Protein D; Nodulation Competitiveness Protein NfeD; NfeD Protein; Membrane Bound Peptidase; Nodulation Protein NfeD; Transmembrane Protein; NfeD Family Protein; Membrane-Bound Serine Protease-Like Protein; Nodulation Efficiency Family Protein; Membrane-Bound Serine Protease ClpP Class; Nodulation Efficiency Protein Nfed; Serine Protease; Membrane-Bound Protease; NfeD-Like Family; Protease/Transporter; S49 Family Serine Protease; Membrane-Bound Serine Protease NfeD-Like Protein; NfeD-Like Membrane-Bound Serine Protease; Nfed Family Protein; Membrane-Bound Serine Protease Protein

Number of amino acids: Translated: 488; Mature: 488

Protein sequence:

>488_residues
MEDRHKTAGSASVVHRTASVLITFFLVLSGGFVASSPKAQETGGTAIVLRLEGAVSPATADYVTNGLEIAAEREARLVVL
LIDTPGGLDTSMREIIRAILASSVPVASFVAPSGARAASAGAYILYASHVAAMAPGTNVGAATPIALGGGSPFGANPEEE
QEAQDSAEEGGEDRGGRRQSPRNASEEKAINDAVAYIRGLAELRGRNAEWAERAVREAASLSSAAAAQQDVIDFTASSID
DLMRKADGLTVQVGQSQTVLETSGLVREAIDPDWRTRLLSVITDPNVALILMMIGIYGLIFEFLNPGTFIPGTIGGISLL
LGLYALAVLPVSYAGVGLIILGAALVLAEAFAPSFGILGIGGAVAFVLGATILFDTEIPGLEIYWPVLGGIAIASLAFSL
LVARLAMVAHRRTVATGAEQMIGARGKVDSWSNGSGYVLVHGERWKAVSAASLAAGTEIRVTGRDGLVLKVAALEPEHSA
SEEGRRKP

Sequences:

>Translated_488_residues
MEDRHKTAGSASVVHRTASVLITFFLVLSGGFVASSPKAQETGGTAIVLRLEGAVSPATADYVTNGLEIAAEREARLVVL
LIDTPGGLDTSMREIIRAILASSVPVASFVAPSGARAASAGAYILYASHVAAMAPGTNVGAATPIALGGGSPFGANPEEE
QEAQDSAEEGGEDRGGRRQSPRNASEEKAINDAVAYIRGLAELRGRNAEWAERAVREAASLSSAAAAQQDVIDFTASSID
DLMRKADGLTVQVGQSQTVLETSGLVREAIDPDWRTRLLSVITDPNVALILMMIGIYGLIFEFLNPGTFIPGTIGGISLL
LGLYALAVLPVSYAGVGLIILGAALVLAEAFAPSFGILGIGGAVAFVLGATILFDTEIPGLEIYWPVLGGIAIASLAFSL
LVARLAMVAHRRTVATGAEQMIGARGKVDSWSNGSGYVLVHGERWKAVSAASLAAGTEIRVTGRDGLVLKVAALEPEHSA
SEEGRRKP
>Mature_488_residues
MEDRHKTAGSASVVHRTASVLITFFLVLSGGFVASSPKAQETGGTAIVLRLEGAVSPATADYVTNGLEIAAEREARLVVL
LIDTPGGLDTSMREIIRAILASSVPVASFVAPSGARAASAGAYILYASHVAAMAPGTNVGAATPIALGGGSPFGANPEEE
QEAQDSAEEGGEDRGGRRQSPRNASEEKAINDAVAYIRGLAELRGRNAEWAERAVREAASLSSAAAAQQDVIDFTASSID
DLMRKADGLTVQVGQSQTVLETSGLVREAIDPDWRTRLLSVITDPNVALILMMIGIYGLIFEFLNPGTFIPGTIGGISLL
LGLYALAVLPVSYAGVGLIILGAALVLAEAFAPSFGILGIGGAVAFVLGATILFDTEIPGLEIYWPVLGGIAIASLAFSL
LVARLAMVAHRRTVATGAEQMIGARGKVDSWSNGSGYVLVHGERWKAVSAASLAAGTEIRVTGRDGLVLKVAALEPEHSA
SEEGRRKP

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50492; Mature: 50492

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDRHKTAGSASVVHRTASVLITFFLVLSGGFVASSPKAQETGGTAIVLRLEGAVSPATA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHH
DYVTNGLEIAAEREARLVVLLIDTPGGLDTSMREIIRAILASSVPVASFVAPSGARAASA
HHHHCCHHEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCC
GAYILYASHVAAMAPGTNVGAATPIALGGGSPFGANPEEEQEAQDSAEEGGEDRGGRRQS
CEEEEEEHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
PRNASEEKAINDAVAYIRGLAELRGRNAEWAERAVREAASLSSAAAAQQDVIDFTASSID
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLMRKADGLTVQVGQSQTVLETSGLVREAIDPDWRTRLLSVITDPNVALILMMIGIYGLI
HHHHHCCCCEEEECCCCEEHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FEFLNPGTFIPGTIGGISLLLGLYALAVLPVSYAGVGLIILGAALVLAEAFAPSFGILGI
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEH
GGAVAFVLGATILFDTEIPGLEIYWPVLGGIAIASLAFSLLVARLAMVAHRRTVATGAEQ
HHHHHHHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
MIGARGKVDSWSNGSGYVLVHGERWKAVSAASLAAGTEIRVTGRDGLVLKVAALEPEHSA
HHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCC
SEEGRRKP
CCCCCCCC
>Mature Secondary Structure
MEDRHKTAGSASVVHRTASVLITFFLVLSGGFVASSPKAQETGGTAIVLRLEGAVSPATA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHH
DYVTNGLEIAAEREARLVVLLIDTPGGLDTSMREIIRAILASSVPVASFVAPSGARAASA
HHHHCCHHEEECCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCC
GAYILYASHVAAMAPGTNVGAATPIALGGGSPFGANPEEEQEAQDSAEEGGEDRGGRRQS
CEEEEEEHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
PRNASEEKAINDAVAYIRGLAELRGRNAEWAERAVREAASLSSAAAAQQDVIDFTASSID
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLMRKADGLTVQVGQSQTVLETSGLVREAIDPDWRTRLLSVITDPNVALILMMIGIYGLI
HHHHHCCCCEEEECCCCEEHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FEFLNPGTFIPGTIGGISLLLGLYALAVLPVSYAGVGLIILGAALVLAEAFAPSFGILGI
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEH
GGAVAFVLGATILFDTEIPGLEIYWPVLGGIAIASLAFSLLVARLAMVAHRRTVATGAEQ
HHHHHHHHHHHHEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
MIGARGKVDSWSNGSGYVLVHGERWKAVSAASLAAGTEIRVTGRDGLVLKVAALEPEHSA
HHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCC
SEEGRRKP
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA