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The map label for this gene is ybbK [C]

Identifier: 110635696

GI number: 110635696

Start: 3637639

End: 3638418

Strand: Reverse

Name: ybbK [C]

Synonym: Meso_3368

Alternate gene names: 110635696

Gene position: 3638418-3637639 (Counterclockwise)

Preceding gene: 110635697

Following gene: 110635694

Centisome position: 82.46

GC content: 57.05

Gene sequence:

>780_bases
ATGAACATGCTTGGCAATATCGGATTATATATTGTTCCGCTCGTCATCTTGCTGATCCTGCTCGCATCGGCGGTCAAGAT
CCTGCGCGAATACGAACGTGGGGTCGTCTTTACGCTTGGCCGGTTCACCGGCGTCAAAGGACCCGGCCTCATCCTGCTCG
TCCCTCTCGTCCAGCAGATGGTGAGGGTGGATCTGCGCACGCTGGTTCTCGACGTGCCGAGCCAGGACGTCATTTCGCGC
GACAACGTATCAGTCCGGGTCAACGCCGTGATTTATTTCCGGGTCATCGACCCTGAAAAAGCGACGATCCAGGTGGAAGA
CTTTATGATGGCCACCAGCCAGCTCGCGCAGACGACGCTGCGCTCCGTCCTAGGCAAACATGATCTCGACGAAATGCTGG
CTGAGCGCGACAAGCTCAACAAGGACATACAGGAGATACTCGATTTTCAGACCGACGCCTGGGGCATCAAGGTGGCGAAT
GTCGAGATCAAGCATGTCGACATCAATGAATCCATGGTCCGCGCCATCGCCAGACAGGCCGAGGCCGAGCGGGAACGGCG
CGCGAAGGTCATCAATGCGGAAGGAGAACAGCAAGCGGCACAAAAACTGCTCGAAGCGGCGGAGATCCTGTCGCGGCAGC
CCGAAGCAATGCAGCTTCGCTATCTCAGCACGCTCAATGTCATAGCCGGAGAGAAGAATTCGACGATCGTTTTCCCGTTT
CCGATGGAAATTTCCGCTCTGGCAAAGGCCTTCGCCGGGGAAACGACGCGGAACAGCTAG

Upstream 100 bases:

>100_bases
CAGGCACGGAGATACGCGTTACCGGCCGCGACGGCCTTGTGCTGAAAGTAGCCGCTCTCGAACCGGAACATAGCGCTTCC
GAAGAAGGCAGGAGAAAACC

Downstream 100 bases:

>100_bases
CGTTCAGCGGAGAATCCGAGCCTGTGAGCGGATTTTTGACGAACGGCCCAGGCATTCCGCGGCTTTCGACGGTCTGCGGC
GCTGGGGCACCGGTCAGACC

Product: SPFH domain-containing protein/band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MNMLGNIGLYIVPLVILLILLASAVKILREYERGVVFTLGRFTGVKGPGLILLVPLVQQMVRVDLRTLVLDVPSQDVISR
DNVSVRVNAVIYFRVIDPEKATIQVEDFMMATSQLAQTTLRSVLGKHDLDEMLAERDKLNKDIQEILDFQTDAWGIKVAN
VEIKHVDINESMVRAIARQAEAERERRAKVINAEGEQQAAQKLLEAAEILSRQPEAMQLRYLSTLNVIAGEKNSTIVFPF
PMEISALAKAFAGETTRNS

Sequences:

>Translated_259_residues
MNMLGNIGLYIVPLVILLILLASAVKILREYERGVVFTLGRFTGVKGPGLILLVPLVQQMVRVDLRTLVLDVPSQDVISR
DNVSVRVNAVIYFRVIDPEKATIQVEDFMMATSQLAQTTLRSVLGKHDLDEMLAERDKLNKDIQEILDFQTDAWGIKVAN
VEIKHVDINESMVRAIARQAEAERERRAKVINAEGEQQAAQKLLEAAEILSRQPEAMQLRYLSTLNVIAGEKNSTIVFPF
PMEISALAKAFAGETTRNS
>Mature_259_residues
MNMLGNIGLYIVPLVILLILLASAVKILREYERGVVFTLGRFTGVKGPGLILLVPLVQQMVRVDLRTLVLDVPSQDVISR
DNVSVRVNAVIYFRVIDPEKATIQVEDFMMATSQLAQTTLRSVLGKHDLDEMLAERDKLNKDIQEILDFQTDAWGIKVAN
VEIKHVDINESMVRAIARQAEAERERRAKVINAEGEQQAAQKLLEAAEILSRQPEAMQLRYLSTLNVIAGEKNSTIVFPF
PMEISALAKAFAGETTRNS

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=249, Percent_Identity=46.9879518072289, Blast_Score=206, Evalue=2e-53,
Organism=Homo sapiens, GI21686995, Length=249, Percent_Identity=46.9879518072289, Blast_Score=206, Evalue=2e-53,
Organism=Homo sapiens, GI38016911, Length=249, Percent_Identity=44.578313253012, Blast_Score=199, Evalue=2e-51,
Organism=Homo sapiens, GI7657615, Length=223, Percent_Identity=36.7713004484305, Blast_Score=145, Evalue=4e-35,
Organism=Homo sapiens, GI7305503, Length=206, Percent_Identity=36.8932038834951, Blast_Score=134, Evalue=7e-32,
Organism=Homo sapiens, GI20149563, Length=154, Percent_Identity=35.7142857142857, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI38016907, Length=56, Percent_Identity=57.1428571428571, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1786697, Length=194, Percent_Identity=38.1443298969072, Blast_Score=140, Evalue=6e-35,
Organism=Caenorhabditis elegans, GI17569493, Length=262, Percent_Identity=45.4198473282443, Blast_Score=224, Evalue=5e-59,
Organism=Caenorhabditis elegans, GI193209764, Length=247, Percent_Identity=46.5587044534413, Blast_Score=218, Evalue=2e-57,
Organism=Caenorhabditis elegans, GI25153583, Length=251, Percent_Identity=46.6135458167331, Blast_Score=209, Evalue=9e-55,
Organism=Caenorhabditis elegans, GI71987612, Length=251, Percent_Identity=46.6135458167331, Blast_Score=209, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI71987621, Length=251, Percent_Identity=46.6135458167331, Blast_Score=209, Evalue=1e-54,
Organism=Caenorhabditis elegans, GI17569499, Length=250, Percent_Identity=46.8, Blast_Score=207, Evalue=4e-54,
Organism=Caenorhabditis elegans, GI17570459, Length=237, Percent_Identity=47.2573839662447, Blast_Score=207, Evalue=6e-54,
Organism=Caenorhabditis elegans, GI17569497, Length=222, Percent_Identity=44.5945945945946, Blast_Score=197, Evalue=4e-51,
Organism=Caenorhabditis elegans, GI193210507, Length=237, Percent_Identity=45.1476793248945, Blast_Score=196, Evalue=8e-51,
Organism=Caenorhabditis elegans, GI17570161, Length=237, Percent_Identity=45.1476793248945, Blast_Score=196, Evalue=8e-51,
Organism=Caenorhabditis elegans, GI71989948, Length=224, Percent_Identity=46.4285714285714, Blast_Score=190, Evalue=7e-49,
Organism=Caenorhabditis elegans, GI32566490, Length=237, Percent_Identity=43.4599156118143, Blast_Score=180, Evalue=7e-46,
Organism=Caenorhabditis elegans, GI71989955, Length=180, Percent_Identity=47.7777777777778, Blast_Score=151, Evalue=3e-37,
Organism=Caenorhabditis elegans, GI71989963, Length=122, Percent_Identity=50.8196721311475, Blast_Score=122, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI32564147, Length=180, Percent_Identity=36.1111111111111, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17542664, Length=162, Percent_Identity=26.5432098765432, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI45556022, Length=223, Percent_Identity=51.5695067264574, Blast_Score=215, Evalue=3e-56,
Organism=Drosophila melanogaster, GI18860517, Length=243, Percent_Identity=46.5020576131687, Blast_Score=213, Evalue=8e-56,
Organism=Drosophila melanogaster, GI24657857, Length=237, Percent_Identity=49.3670886075949, Blast_Score=201, Evalue=4e-52,
Organism=Drosophila melanogaster, GI62484448, Length=237, Percent_Identity=49.3670886075949, Blast_Score=200, Evalue=6e-52,
Organism=Drosophila melanogaster, GI281365664, Length=237, Percent_Identity=49.3670886075949, Blast_Score=200, Evalue=6e-52,
Organism=Drosophila melanogaster, GI62484274, Length=252, Percent_Identity=48.015873015873, Blast_Score=200, Evalue=1e-51,
Organism=Drosophila melanogaster, GI28573263, Length=242, Percent_Identity=39.2561983471074, Blast_Score=187, Evalue=6e-48,
Organism=Drosophila melanogaster, GI21356845, Length=237, Percent_Identity=37.9746835443038, Blast_Score=182, Evalue=2e-46,
Organism=Drosophila melanogaster, GI281361631, Length=240, Percent_Identity=37.0833333333333, Blast_Score=177, Evalue=6e-45,
Organism=Drosophila melanogaster, GI281361633, Length=240, Percent_Identity=37.0833333333333, Blast_Score=177, Evalue=6e-45,
Organism=Drosophila melanogaster, GI281361635, Length=180, Percent_Identity=39.4444444444444, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI45550506, Length=177, Percent_Identity=38.9830508474576, Blast_Score=130, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28911; Mature: 28911

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMLGNIGLYIVPLVILLILLASAVKILREYERGVVFTLGRFTGVKGPGLILLVPLVQQM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHCCCCCCCCEEHHHHHHHH
VRVDLRTLVLDVPSQDVISRDNVSVRVNAVIYFRVIDPEKATIQVEDFMMATSQLAQTTL
HHHHHHHHHEECCCHHHHCCCCCEEEEEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHH
RSVLGKHDLDEMLAERDKLNKDIQEILDFQTDAWGIKVANVEIKHVDINESMVRAIARQA
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHH
EAERERRAKVINAEGEQQAAQKLLEAAEILSRQPEAMQLRYLSTLNVIAGEKNSTIVFPF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
PMEISALAKAFAGETTRNS
CCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNMLGNIGLYIVPLVILLILLASAVKILREYERGVVFTLGRFTGVKGPGLILLVPLVQQM
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHCCCCCCCCEEHHHHHHHH
VRVDLRTLVLDVPSQDVISRDNVSVRVNAVIYFRVIDPEKATIQVEDFMMATSQLAQTTL
HHHHHHHHHEECCCHHHHCCCCCEEEEEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHH
RSVLGKHDLDEMLAERDKLNKDIQEILDFQTDAWGIKVANVEIKHVDINESMVRAIARQA
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCHHHHHHHHHHH
EAERERRAKVINAEGEQQAAQKLLEAAEILSRQPEAMQLRYLSTLNVIAGEKNSTIVFPF
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEC
PMEISALAKAFAGETTRNS
CCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]