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The map label for this gene is ydfH [C]

Identifier: 110635649

GI number: 110635649

Start: 3588767

End: 3589459

Strand: Reverse

Name: ydfH [C]

Synonym: Meso_3321

Alternate gene names: 110635649

Gene position: 3589459-3588767 (Counterclockwise)

Preceding gene: 110635659

Following gene: 110635646

Centisome position: 81.35

GC content: 63.35

Gene sequence:

>693_bases
ATGATACATCATTTGGGATTCAGCGACTTACCAATGGCGGTTCAGCTTAGCAGACAATCTTTCGGGCCGGTCGCGGCCAA
GGCCTATGCTCAGCTCGAAAGAATGATTATTACGCTGGAGCTCGCTCCCGGCACCGTCACCACCGAGGGGGCTTTGATCG
AAAATCTGGGTCTCGGCCGCACGCCGGTGAGGGAGGCCATACAGCGCCTGGCATGGGAAGGTTTTGTGGAAGTCCGTCCG
CGGGCGGGCGTCGCCATTGCGCCGCTCAACCGCCCGGATTGGCTGAAGATCATCGATGCGCGTCACAGTGTGGAGATACT
GCTCGCCCGGTCCGCGGCCCGCTATGCGACCGGTCCTGTCGTCGCCCAGTTTCATGAGGCAGCTTTGCGGATGGAGCGGG
CGGTCGTCTCGGGCGATCCCGTCAACTTCCTGGAGGCGGACAAGCGCGTCGACGAGGTGCTGGCCGAAACGGCAGACAAT
GCCTATGCTGCGAAGGTTGCGGGCCCCCTACAGACCCACTGCCGCCGCTTCTGGTATCGCTATCAGTCCGGGCAGGACCT
CGCGCTTGCGGCCGAGCGGCATGTGCGCCTCATTCGCGCCGTCATCGACCGCAACGAGGAGGACGCCGGGAACGAAGCGG
AAGCTCTCATGGGCCTCCTGCGCATGCATGCCGAAAGCGTTGCGCGCCTCTGA

Upstream 100 bases:

>100_bases
TATTGAAGTGGCCGGCAGGATTGTACTCCAAAGGGCGTGACTTTGATATATCAGGGGTATATAACAACGGAAAACGTGCT
TTGTGAAGCATAATCGTCGA

Downstream 100 bases:

>100_bases
TTGCAAGCTCAGACGCCTTCGCCCACCAGAGTCGCGAAATTGTCGTCCCAACCCTCACCGGCCGCGACGATGCAGCTTGT
GCCATTGGTATCGGTGGTCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator Gntr Family; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; HTH-Type Transcriptional Regulator; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; Transcriptional Regulator Gntr Family Protein; Transcriptional Regulatory Protein GntR Family; Regulatory Protein GntR; Transcriptional Regulator Protein GntR Family; FCD Domain Protein; GntR Domain Protein; Transcriptional Regulator YdhC; Regulatory Protein GntR HTH

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MIHHLGFSDLPMAVQLSRQSFGPVAAKAYAQLERMIITLELAPGTVTTEGALIENLGLGRTPVREAIQRLAWEGFVEVRP
RAGVAIAPLNRPDWLKIIDARHSVEILLARSAARYATGPVVAQFHEAALRMERAVVSGDPVNFLEADKRVDEVLAETADN
AYAAKVAGPLQTHCRRFWYRYQSGQDLALAAERHVRLIRAVIDRNEEDAGNEAEALMGLLRMHAESVARL

Sequences:

>Translated_230_residues
MIHHLGFSDLPMAVQLSRQSFGPVAAKAYAQLERMIITLELAPGTVTTEGALIENLGLGRTPVREAIQRLAWEGFVEVRP
RAGVAIAPLNRPDWLKIIDARHSVEILLARSAARYATGPVVAQFHEAALRMERAVVSGDPVNFLEADKRVDEVLAETADN
AYAAKVAGPLQTHCRRFWYRYQSGQDLALAAERHVRLIRAVIDRNEEDAGNEAEALMGLLRMHAESVARL
>Mature_230_residues
MIHHLGFSDLPMAVQLSRQSFGPVAAKAYAQLERMIITLELAPGTVTTEGALIENLGLGRTPVREAIQRLAWEGFVEVRP
RAGVAIAPLNRPDWLKIIDARHSVEILLARSAARYATGPVVAQFHEAALRMERAVVSGDPVNFLEADKRVDEVLAETADN
AYAAKVAGPLQTHCRRFWYRYQSGQDLALAAERHVRLIRAVIDRNEEDAGNEAEALMGLLRMHAESVARL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25408; Mature: 25408

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHHLGFSDLPMAVQLSRQSFGPVAAKAYAQLERMIITLELAPGTVTTEGALIENLGLGR
CCCCCCCCCCCHHEEEHHHCCCHHHHHHHHHHHHEEEEEEECCCCEECCCHHHHHCCCCC
TPVREAIQRLAWEGFVEVRPRAGVAIAPLNRPDWLKIIDARHSVEILLARSAARYATGPV
CHHHHHHHHHHHCCCEEECCCCCEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCHH
VAQFHEAALRMERAVVSGDPVNFLEADKRVDEVLAETADNAYAAKVAGPLQTHCRRFWYR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH
YQSGQDLALAAERHVRLIRAVIDRNEEDAGNEAEALMGLLRMHAESVARL
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIHHLGFSDLPMAVQLSRQSFGPVAAKAYAQLERMIITLELAPGTVTTEGALIENLGLGR
CCCCCCCCCCCHHEEEHHHCCCHHHHHHHHHHHHEEEEEEECCCCEECCCHHHHHCCCCC
TPVREAIQRLAWEGFVEVRPRAGVAIAPLNRPDWLKIIDARHSVEILLARSAARYATGPV
CHHHHHHHHHHHCCCEEECCCCCEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCHH
VAQFHEAALRMERAVVSGDPVNFLEADKRVDEVLAETADNAYAAKVAGPLQTHCRRFWYR
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH
YQSGQDLALAAERHVRLIRAVIDRNEEDAGNEAEALMGLLRMHAESVARL
HCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA