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The map label for this gene is yiaJ [C]

Identifier: 110635631

GI number: 110635631

Start: 3569812

End: 3570546

Strand: Reverse

Name: yiaJ [C]

Synonym: Meso_3303

Alternate gene names: 110635631

Gene position: 3570546-3569812 (Counterclockwise)

Preceding gene: 110635634

Following gene: 110635629

Centisome position: 80.92

GC content: 61.09

Gene sequence:

>735_bases
ATGGCGACGCCGCTGAACGGCACAATTTTGAAGGCTTTCCAGATACTTCGGCTCGCCTCGTTCGAGCGGCCGGACATATC
GGCGCAACGCGTCCAGTCGGAACTTGGAATGAATTTTGCCACTGCTCACCGTTTCCTCGTGACGCTTGAGGAGGCGGGAG
CGCTCATCTCGATAAGGCGCGGCGTCTACCGTTTGGGCCCGTCCGTCGGAAAAATGGGGCGGCTTGCGGAATCCACCACT
CCTCACCTTGAGGCCATCCAGCCATTTCTGGACGCGCTCCGCGCACGTCTCAACGAGTCGGTAATGCTCTGCAGGTTTAG
CCGTGCCGGACCGACCTGCGTTGCCGTTGCGCTCGCCGAGCGGCCAATCACCGTCGCCATACGGATCGGCACCACACTCA
ATTTCCTCACATCGGCGCAAGGGCGGTTATGGCTGGCAAGCCTCGAACCGTGGGAGCGAGACGAACTGCTCGCTGGCGAG
TCGCATCTCGTTGATCGTCCCGGCCTCGAAGCGGATCTCGCAGCCATTCGCCGCGACGGCGTTGCACAAAACTATGGTGA
TGCCGAGCCTGATATTGCTGCCGTGGCCGCCCCTATCCGCAATGCTCAGGGCGATCTCCTTCTCACGGTGGCGGTGTTTG
GCCCGAAGACCCGGTTCACATCCGATTTCATCAGCATGGCCGCGGAAAGCGTGAAGCGCGTGGCCGGTGATGTCGAAATC
AGTCTTACCCGGTGA

Upstream 100 bases:

>100_bases
CAAAAAACTTTTCTAATCTCATATAATGAGATATATATCTTAGGATACGAAAGATGCGCCAGCGAGTCAATTCGAGGGCG
CAGGCCAGTGGAGGGTTGTG

Downstream 100 bases:

>100_bases
GCATAGCCGCAGAGGCGCGGTTCCCTGTTACGGTGTGCGGCAGCGGGGGTGACTTGGAGCACGCTCTACCCGGCAGCGTA
TCGTGATTTTTATTCAACCG

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator IclR Family; Transcriptional Regulator; IclR-Family Transcriptional Regulator; Transcriptional Regulatory Protein; Transcriptional Regulator Family Protein; Helix-Turn-Helix Type; Transcriptional Regulator IclR; Transcriptional Regulator Iclr Family; Transcriptional Regulator Protein; TRANSCRIPTIONal REGULATOR IclR Family; IclR Helix-Turn-Helix Domain Family; Regulatory Proteins IclR

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MATPLNGTILKAFQILRLASFERPDISAQRVQSELGMNFATAHRFLVTLEEAGALISIRRGVYRLGPSVGKMGRLAESTT
PHLEAIQPFLDALRARLNESVMLCRFSRAGPTCVAVALAERPITVAIRIGTTLNFLTSAQGRLWLASLEPWERDELLAGE
SHLVDRPGLEADLAAIRRDGVAQNYGDAEPDIAAVAAPIRNAQGDLLLTVAVFGPKTRFTSDFISMAAESVKRVAGDVEI
SLTR

Sequences:

>Translated_244_residues
MATPLNGTILKAFQILRLASFERPDISAQRVQSELGMNFATAHRFLVTLEEAGALISIRRGVYRLGPSVGKMGRLAESTT
PHLEAIQPFLDALRARLNESVMLCRFSRAGPTCVAVALAERPITVAIRIGTTLNFLTSAQGRLWLASLEPWERDELLAGE
SHLVDRPGLEADLAAIRRDGVAQNYGDAEPDIAAVAAPIRNAQGDLLLTVAVFGPKTRFTSDFISMAAESVKRVAGDVEI
SLTR
>Mature_243_residues
ATPLNGTILKAFQILRLASFERPDISAQRVQSELGMNFATAHRFLVTLEEAGALISIRRGVYRLGPSVGKMGRLAESTTP
HLEAIQPFLDALRARLNESVMLCRFSRAGPTCVAVALAERPITVAIRIGTTLNFLTSAQGRLWLASLEPWERDELLAGES
HLVDRPGLEADLAAIRRDGVAQNYGDAEPDIAAVAAPIRNAQGDLLLTVAVFGPKTRFTSDFISMAAESVKRVAGDVEIS
LTR

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26421; Mature: 26290

Theoretical pI: Translated: 7.52; Mature: 7.52

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPLNGTILKAFQILRLASFERPDISAQRVQSELGMNFATAHRFLVTLEEAGALISIRR
CCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHEEEHHHCCCCHHHHH
GVYRLGPSVGKMGRLAESTTPHLEAIQPFLDALRARLNESVMLCRFSRAGPTCVAVALAE
HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECC
RPITVAIRIGTTLNFLTSAQGRLWLASLEPWERDELLAGESHLVDRPGLEADLAAIRRDG
CCEEEEEEECCCHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHCC
VAQNYGDAEPDIAAVAAPIRNAQGDLLLTVAVFGPKTRFTSDFISMAAESVKRVAGDVEI
CCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEE
SLTR
EEEC
>Mature Secondary Structure 
ATPLNGTILKAFQILRLASFERPDISAQRVQSELGMNFATAHRFLVTLEEAGALISIRR
CCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHEEEHHHCCCCHHHHH
GVYRLGPSVGKMGRLAESTTPHLEAIQPFLDALRARLNESVMLCRFSRAGPTCVAVALAE
HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEECC
RPITVAIRIGTTLNFLTSAQGRLWLASLEPWERDELLAGESHLVDRPGLEADLAAIRRDG
CCEEEEEEECCCHHHHHCCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHCC
VAQNYGDAEPDIAAVAAPIRNAQGDLLLTVAVFGPKTRFTSDFISMAAESVKRVAGDVEI
CCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEE
SLTR
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA