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The map label for this gene is ycaK [H]

Identifier: 110635629

GI number: 110635629

Start: 3568035

End: 3568691

Strand: Reverse

Name: ycaK [H]

Synonym: Meso_3301

Alternate gene names: 110635629

Gene position: 3568691-3568035 (Counterclockwise)

Preceding gene: 110635631

Following gene: 110635614

Centisome position: 80.88

GC content: 56.01

Gene sequence:

>657_bases
ATGGACGACAGCACTCATTCCCCAAGGATTCATATTATCTGGGCGCACCCGCGCCGCGACTCCCTGACCGGGCGGGTTGT
CAATGCAATCTCGACCGAGGCGCAACAGTTGGGGATGAAAATTGTTGAGCTCGACCTATACCGGTCCGGCTTTGATCCCG
TGCTGGAGCCGGAGGATGAGCCTGATTTCACGAACCCCCACAAACGGTATTCCGACGAGGTTTTGGAGCTCGCTGGCTCG
CTGACCGGTTCCGATGCCGCCATCATCGTTTTCCCGGTCTGGTGGTATTCGTTGCCTGCGATGCTCAAGGGGTATATCGA
TCGCGTGTGGAACTATGGTCTTCTTTACGGCAATGGCAAACGACTGCCATTCTCAGCAATCCGCTGGGTCGCGCTTGTGG
GCGGTGGTGAGACACGCTTCGTGCGCGAGCATAAGGATCGCTACATGGAAGACCTTCTTAACGATGGCATTGCCATCTAC
TGTGGCGTTGAAAACTCGACCGTGACTTTTCTCTATAACACGCTTGCCTATGAGGAAGAGGCGGACCTCAGCCAGCATCA
TCAGGTGCTGATAGAGCAGGCGCGTTCAGTGGTGCGCGAGCTAAATACGGGTTTTAGCCGCAACATAGAGCGGGTAGGCG
AGAGTGCGCATGCCTGA

Upstream 100 bases:

>100_bases
ATCGTATTATCATAACAATCAACCACTCCTAACTACGAGTTCCAAACCGCGATGCGTGCGTGAAGGCACACCGCATCATT
CTTGAATAGGAACTCTCGTA

Downstream 100 bases:

>100_bases
TTTGCCGATTTCGGCAAACTGCGCATCCATTTCGAGCTTCACGAGATCCTCGCGCATCATCCTTTCCACCAAATGCCAGC
TGGGCGCATAGTGGCAATAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MDDSTHSPRIHIIWAHPRRDSLTGRVVNAISTEAQQLGMKIVELDLYRSGFDPVLEPEDEPDFTNPHKRYSDEVLELAGS
LTGSDAAIIVFPVWWYSLPAMLKGYIDRVWNYGLLYGNGKRLPFSAIRWVALVGGGETRFVREHKDRYMEDLLNDGIAIY
CGVENSTVTFLYNTLAYEEEADLSQHHQVLIEQARSVVRELNTGFSRNIERVGESAHA

Sequences:

>Translated_218_residues
MDDSTHSPRIHIIWAHPRRDSLTGRVVNAISTEAQQLGMKIVELDLYRSGFDPVLEPEDEPDFTNPHKRYSDEVLELAGS
LTGSDAAIIVFPVWWYSLPAMLKGYIDRVWNYGLLYGNGKRLPFSAIRWVALVGGGETRFVREHKDRYMEDLLNDGIAIY
CGVENSTVTFLYNTLAYEEEADLSQHHQVLIEQARSVVRELNTGFSRNIERVGESAHA
>Mature_218_residues
MDDSTHSPRIHIIWAHPRRDSLTGRVVNAISTEAQQLGMKIVELDLYRSGFDPVLEPEDEPDFTNPHKRYSDEVLELAGS
LTGSDAAIIVFPVWWYSLPAMLKGYIDRVWNYGLLYGNGKRLPFSAIRWVALVGGGETRFVREHKDRYMEDLLNDGIAIY
CGVENSTVTFLYNTLAYEEEADLSQHHQVLIEQARSVVRELNTGFSRNIERVGESAHA

Specific function: Unknown

COG id: COG2249

COG function: function code R; Putative NADPH-quinone reductase (modulator of drug activity B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD(P)H dehydrogenase (quinone) family [H]

Homologues:

Organism=Escherichia coli, GI1787129, Length=196, Percent_Identity=48.9795918367347, Blast_Score=205, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003680 [H]

Pfam domain/function: PF02525 Flavodoxin_2 [H]

EC number: 1.6.99.- [C]

Molecular weight: Translated: 24782; Mature: 24782

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDSTHSPRIHIIWAHPRRDSLTGRVVNAISTEAQQLGMKIVELDLYRSGFDPVLEPEDE
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCHHHEEEEHHHCCCCCCCCCCCC
PDFTNPHKRYSDEVLELAGSLTGSDAAIIVFPVWWYSLPAMLKGYIDRVWNYGLLYGNGK
CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCC
RLPFSAIRWVALVGGGETRFVREHKDRYMEDLLNDGIAIYCGVENSTVTFLYNTLAYEEE
CCCHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEHHHHCCCC
ADLSQHHQVLIEQARSVVRELNTGFSRNIERVGESAHA
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MDDSTHSPRIHIIWAHPRRDSLTGRVVNAISTEAQQLGMKIVELDLYRSGFDPVLEPEDE
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCHHHEEEEHHHCCCCCCCCCCCC
PDFTNPHKRYSDEVLELAGSLTGSDAAIIVFPVWWYSLPAMLKGYIDRVWNYGLLYGNGK
CCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCC
RLPFSAIRWVALVGGGETRFVREHKDRYMEDLLNDGIAIYCGVENSTVTFLYNTLAYEEE
CCCHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEHHHHCCCC
ADLSQHHQVLIEQARSVVRELNTGFSRNIERVGESAHA
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 3053170; 7567469 [H]