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The map label for this gene is ybbN [H]

Identifier: 110635601

GI number: 110635601

Start: 3536642

End: 3537622

Strand: Reverse

Name: ybbN [H]

Synonym: Meso_3272

Alternate gene names: 110635601

Gene position: 3537622-3536642 (Counterclockwise)

Preceding gene: 110635614

Following gene: 110635600

Centisome position: 80.17

GC content: 63.51

Gene sequence:

>981_bases
ATGAACGACCGTGAAAACCCATATGCGGGCGGTGGAATGACAGGCAATGTCACCTTCGGCGGCGCGTCCCGCGCGGATGC
CGGCGGCGCTGCCGCCCACGCACTTGCGCCTTCCTCCGGGGATCTCATAAAAGACACAAGCACCGCTTCCTTTGCCGCGG
ATGTGATTCAGGAATCCCGCAATCAGCCCGTGCTTGTGGATTTCTGGGCGCCCTGGTGCGGGCCTTGCAAGCAGCTTACG
CCCCTGCTCGAAAAAGCGGTGCGCGAGGCGGGCGGCCGCGTGAAGCTGGTGAAGCTCAATATCGATGACCATCCGGCCAT
TCCAGGCCAATTGGGCATCCAGTCCATTCCGGCCATCATTGCCTTCAAGGAAGGCCAGCCCGTCGATGGCTTCATGGGTG
CCGTTCCGGAGAGCCAGATCCGCGATTTCATAAAGCGGATTTCCGCTGGCGGCAGCAAAGTGGAGGAGGCGCTGGCAGCC
GCCGCCGAGGCGCGCGAAGCCGGCGATTCGCAGATGGCGGCGCAAATCTACTCGGCCGTCCTCCAGCAGGAACCCGAGCA
GGTGGACGCACTTGCGGGACTTGCAGATCTTCTCTTCGAAGCGGGACAGACAGACGAGGCGCGCTCGCTGCTCGACCAGG
TGCCGGACGCCAAGAAGAACGCGGCGGCTGTGGCCACGGTGCGCGCGAAGATGGCCCTTGCCGAGCAGGTGGCCGGCCTG
GGCAATCCGGCCGAGCTTCAGCAACGCCTTGCCTCGAATCCTGATGATCATCAGGCTCGTTTCGACCTGGCGCTGATCCT
CAATGCTCAGGGAAAGCGCGCGGAAGCGGCCGACAATCTTCTCGCCATCATCAAGGCGGATCGCAGCTGGAACGACGATG
CAGCGCGGGGCAAGCTGCTTGAGCTTTTCGATGCCTGGGGGATGACGGATCCTGCAACGCTCTCCGCGCGGCGCAGGCTC
TCTTCGCTCCTGTTCTCGTAG

Upstream 100 bases:

>100_bases
AATAACGCAATGAACGCCACATCACGGGAGCCGCTTTGCGTTTGCCGGATCGGCTGTTATCTGCAAGTTTCAAGGGACGG
ACAATTCTAGGAAGGCCGAC

Downstream 100 bases:

>100_bases
CCATTTTTGGGGGGGCAGGGAATCGCGGGACTTCGGCGATATCCTTGGCTCCCGCCAGGAGATGAGATGTGAAAGCCGGT
AACGCCGTTTACCACGATAT

Product: thioredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MNDRENPYAGGGMTGNVTFGGASRADAGGAAAHALAPSSGDLIKDTSTASFAADVIQESRNQPVLVDFWAPWCGPCKQLT
PLLEKAVREAGGRVKLVKLNIDDHPAIPGQLGIQSIPAIIAFKEGQPVDGFMGAVPESQIRDFIKRISAGGSKVEEALAA
AAEAREAGDSQMAAQIYSAVLQQEPEQVDALAGLADLLFEAGQTDEARSLLDQVPDAKKNAAAVATVRAKMALAEQVAGL
GNPAELQQRLASNPDDHQARFDLALILNAQGKRAEAADNLLAIIKADRSWNDDAARGKLLELFDAWGMTDPATLSARRRL
SSLLFS

Sequences:

>Translated_326_residues
MNDRENPYAGGGMTGNVTFGGASRADAGGAAAHALAPSSGDLIKDTSTASFAADVIQESRNQPVLVDFWAPWCGPCKQLT
PLLEKAVREAGGRVKLVKLNIDDHPAIPGQLGIQSIPAIIAFKEGQPVDGFMGAVPESQIRDFIKRISAGGSKVEEALAA
AAEAREAGDSQMAAQIYSAVLQQEPEQVDALAGLADLLFEAGQTDEARSLLDQVPDAKKNAAAVATVRAKMALAEQVAGL
GNPAELQQRLASNPDDHQARFDLALILNAQGKRAEAADNLLAIIKADRSWNDDAARGKLLELFDAWGMTDPATLSARRRL
SSLLFS
>Mature_326_residues
MNDRENPYAGGGMTGNVTFGGASRADAGGAAAHALAPSSGDLIKDTSTASFAADVIQESRNQPVLVDFWAPWCGPCKQLT
PLLEKAVREAGGRVKLVKLNIDDHPAIPGQLGIQSIPAIIAFKEGQPVDGFMGAVPESQIRDFIKRISAGGSKVEEALAA
AAEAREAGDSQMAAQIYSAVLQQEPEQVDALAGLADLLFEAGQTDEARSLLDQVPDAKKNAAAVATVRAKMALAEQVAGL
GNPAELQQRLASNPDDHQARFDLALILNAQGKRAEAADNLLAIIKADRSWNDDAARGKLLELFDAWGMTDPATLSARRRL
SSLLFS

Specific function: Unknown

COG id: COG3118

COG function: function code O; Thioredoxin domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI21361403, Length=85, Percent_Identity=43.5294117647059, Blast_Score=82, Evalue=5e-16,
Organism=Escherichia coli, GI87081747, Length=288, Percent_Identity=30.5555555555556, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788936, Length=76, Percent_Identity=47.3684210526316, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082331, Length=104, Percent_Identity=37.5, Blast_Score=86, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI212646193, Length=103, Percent_Identity=41.747572815534, Blast_Score=88, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17554386, Length=91, Percent_Identity=35.1648351648352, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28573567, Length=96, Percent_Identity=35.4166666666667, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21358065, Length=128, Percent_Identity=32.8125, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005746
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR013766
- InterPro:   IPR012335
- InterPro:   IPR011990 [H]

Pfam domain/function: PF00085 Thioredoxin [H]

EC number: NA

Molecular weight: Translated: 34333; Mature: 34333

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS50293 TPR_REGION ; PS00194 THIOREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDRENPYAGGGMTGNVTFGGASRADAGGAAAHALAPSSGDLIKDTSTASFAADVIQESR
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
NQPVLVDFWAPWCGPCKQLTPLLEKAVREAGGRVKLVKLNIDDHPAIPGQLGIQSIPAII
CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHCHHHCCEEE
AFKEGQPVDGFMGAVPESQIRDFIKRISAGGSKVEEALAAAAEAREAGDSQMAAQIYSAV
EECCCCCCCHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LQQEPEQVDALAGLADLLFEAGQTDEARSLLDQVPDAKKNAAAVATVRAKMALAEQVAGL
HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
GNPAELQQRLASNPDDHQARFDLALILNAQGKRAEAADNLLAIIKADRSWNDDAARGKLL
CCHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCHHHHHHEEEEEECCCCCCCHHHHHHHH
ELFDAWGMTDPATLSARRRLSSLLFS
HHHHHCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNDRENPYAGGGMTGNVTFGGASRADAGGAAAHALAPSSGDLIKDTSTASFAADVIQESR
CCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
NQPVLVDFWAPWCGPCKQLTPLLEKAVREAGGRVKLVKLNIDDHPAIPGQLGIQSIPAII
CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHCHHHCCEEE
AFKEGQPVDGFMGAVPESQIRDFIKRISAGGSKVEEALAAAAEAREAGDSQMAAQIYSAV
EECCCCCCCHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LQQEPEQVDALAGLADLLFEAGQTDEARSLLDQVPDAKKNAAAVATVRAKMALAEQVAGL
HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
GNPAELQQRLASNPDDHQARFDLALILNAQGKRAEAADNLLAIIKADRSWNDDAARGKLL
CCHHHHHHHHHCCCCCHHHHEEEEEEEECCCCCHHHHHHEEEEEECCCCCCCHHHHHHHH
ELFDAWGMTDPATLSARRRLSSLLFS
HHHHHCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]