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The map label for this gene is omp16 [H]

Identifier: 110635499

GI number: 110635499

Start: 3443483

End: 3444001

Strand: Reverse

Name: omp16 [H]

Synonym: Meso_3170

Alternate gene names: 110635499

Gene position: 3444001-3443483 (Counterclockwise)

Preceding gene: 110635500

Following gene: 110635498

Centisome position: 78.05

GC content: 68.4

Gene sequence:

>519_bases
ATGCGCCGTATCGCAGCTCTGACGAGAAACCCTGTCGCCATCGCCCTGGTAGCCGCGCTTGCCGTCGCCGGATGCCGCTC
CAACAAGCAGGTCCCCAATTCGGCGGCCGATCTCGGTCTCGGCGCCGGCGGCGTGGCCGGAACCGCCACCCCCGGCTCGA
AGCAGGAGTTTACGGTTGCCATCGGCGATCGCATCTTCTTCGACACCGATTCCTCGGTGATCCGCGCGGACGCCCAGGCC
ACGCTGGCCCGCCAGGCACAATGGCTCAACCAGTACCCCTCCTATTCGGTCACCGTCGAGGGCCATGCCGACGAACGCGG
CACGCGCGAATACAATCTGGCGCTCGGCGCCCGCCGCGCCGCCGCCGCGCGCGACTTCCTGGTCTCCCGCGGCGTGGCCG
CAAACCGCATCCAAACGATCTCCTATGGCAAGGAGCGTCCGGTCGCCGTTTGCGACGACATCTCCTGCTGGTCGCAGAAC
CGGCGCGCAGTGACGGTGCTGAACGGCGCCGGCAGCTGA

Upstream 100 bases:

>100_bases
CGGCAAGGAAAAATTAACCCTGTTTCTTGAGCGCCCTTTAACTGAGCCATGGTTACTAGGTGTTCAAGAAATCCCTTCTA
ATGCCAAGGAGAGTGACGGC

Downstream 100 bases:

>100_bases
TCAAAAGCCAATAGCAGTGAATAGCGAATAGGGACGTGTTGCAGAAAGGCCCGCCTTTCTGATCCCTTTTCGCTATTCGC
CCGCGAAACAAAATTTGGCC

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MRRIAALTRNPVAIALVAALAVAGCRSNKQVPNSAADLGLGAGGVAGTATPGSKQEFTVAIGDRIFFDTDSSVIRADAQA
TLARQAQWLNQYPSYSVTVEGHADERGTREYNLALGARRAAAARDFLVSRGVAANRIQTISYGKERPVAVCDDISCWSQN
RRAVTVLNGAGS

Sequences:

>Translated_172_residues
MRRIAALTRNPVAIALVAALAVAGCRSNKQVPNSAADLGLGAGGVAGTATPGSKQEFTVAIGDRIFFDTDSSVIRADAQA
TLARQAQWLNQYPSYSVTVEGHADERGTREYNLALGARRAAAARDFLVSRGVAANRIQTISYGKERPVAVCDDISCWSQN
RRAVTVLNGAGS
>Mature_172_residues
MRRIAALTRNPVAIALVAALAVAGCRSNKQVPNSAADLGLGAGGVAGTATPGSKQEFTVAIGDRIFFDTDSSVIRADAQA
TLARQAQWLNQYPSYSVTVEGHADERGTREYNLALGARRAAAARDFLVSRGVAANRIQTISYGKERPVAVCDDISCWSQN
RRAVTVLNGAGS

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=172, Percent_Identity=41.8604651162791, Blast_Score=122, Evalue=9e-30,
Organism=Escherichia coli, GI48994946, Length=116, Percent_Identity=29.3103448275862, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18107; Mature: 18107

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRIAALTRNPVAIALVAALAVAGCRSNKQVPNSAADLGLGAGGVAGTATPGSKQEFTVA
CCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEE
IGDRIFFDTDSSVIRADAQATLARQAQWLNQYPSYSVTVEGHADERGTREYNLALGARRA
ECCEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCHHH
AAARDFLVSRGVAANRIQTISYGKERPVAVCDDISCWSQNRRAVTVLNGAGS
HHHHHHHHHCCCCHHHEEEECCCCCCCEEEECCCHHHCCCCEEEEEEECCCC
>Mature Secondary Structure
MRRIAALTRNPVAIALVAALAVAGCRSNKQVPNSAADLGLGAGGVAGTATPGSKQEFTVA
CCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEE
IGDRIFFDTDSSVIRADAQATLARQAQWLNQYPSYSVTVEGHADERGTREYNLALGARRA
ECCEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCCHHH
AAARDFLVSRGVAANRIQTISYGKERPVAVCDDISCWSQNRRAVTVLNGAGS
HHHHHHHHHCCCCHHHEEEECCCCCCCEEEECCCHHHCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]