Click here to switch to the map view.

The map label for this gene is ybgF [C]

Identifier: 110635498

GI number: 110635498

Start: 3442302

End: 3443306

Strand: Reverse

Name: ybgF [C]

Synonym: Meso_3169

Alternate gene names: 110635498

Gene position: 3443306-3442302 (Counterclockwise)

Preceding gene: 110635499

Following gene: 110635497

Centisome position: 78.04

GC content: 65.97

Gene sequence:

>1005_bases
ATGCTGTCCCGAAACCGTCTGCGTGGCCTTGCCGCGCTCATCTTCTTTGTCGCGACGTCCGCCGGGCCGGCCGCGGCTTT
CCAATTGCCATGGGTGCAAAAGCCCACCCGCCCGGCCGGCGGCGCTCCAGTCGTCCAGGCCCAGGCCGCCGACCCCAGGC
TGATGACGCTTGAGGAAGAGATCCGCAAGCTCAACGGCATGGTCGAAGAGCTCAACTTCCAGATCCTGCAGATGCAAGAC
CAGATGCGCCGCATGCAGGAAGACACCGAGTTCCGCTTCCAGGAGCTGGAGGGTGGCGCAGGCACCAACCAGGGCGGCCG
CCCGGAGCAGAGGAGCGAGCGCTTGACGCCGCCCGCCGAGGCAAGCCAGCAGACTGCCGCCGCAGGCACGCTGTCCTTGC
CGCCGGCGGAAGCACAGGCTCCCTCCCAGAACCCCCAGGTTGCCGGCCAGCAAGGAGGGGGCGGGCCGGAGCGCGGCGCC
CCTCCCTCCACGCTTGGCACCATCACCTTCGACCAGAACGGTAATGTTATCACCAGCGGGGCGGGCCAGCCGGTCGACCT
CCTGCGGGGAACGCCGACGGGCGGCACTGATAACGCCGTGGTTGCAGCGCTGCCGCATTCCAATAATCCCGAAGAGATAT
ATCAGAGTTCCTACCAGTTCATCCTTTCGGGCGATTACAAGACGGCCGAAGCCGGCTTCCGGCAGTATCTCGATATGTTC
CCCGAAGGCGAGCACGCGGCGGACGCGAATTTCTGGCTGGGGGAAGCAATGCTCGGCCAGGACCGGTACCGCGAGGCGGC
CGAGGTGTTCCTCAACGCGAACCGCCAGTTCCCGAATGCCAGCAAGTCGCCGGAGATGCTCCTGAAGCTGGGCGTTTCGC
TCGCGGCCATGCAACAGCGCGACGTGGCATGCGCGACCTATACCGAGATCGGCCATCGTTACCCGGACGTCTCCTCCGCG
CTCAAGGAGCGCGTGAAGCAGGAACAGGCGCTTGCGGGTTGCTGA

Upstream 100 bases:

>100_bases
TCGCCCGCGAAACAAAATTTGGCCGAAGTCTCGCGACCTGATAAGGGGATGCCGCAGGGTTAACTCCCTGTCCTTTTCTT
GGTCGAGAAGCGAGATAGGA

Downstream 100 bases:

>100_bases
GCGACACGGCCTCGCCGGAACCGGGCGCGCTCTTTTCTGACATCCGCTTCGCCGGACGCAAAACGGTTGTTGCGGCGGTT
TCGGGCGGCGGCGATTCACT

Product: tetratricopeptide TPR_2

Products: NA

Alternate protein names: L-Pal System YbgF; TPR Repeat-Containing Protein; TPR RepeatMolluscan Rhodopsin C-Terminal Domain Protein; TPR Repeat Protein; L System Periplasmic Component YbgF; Tetratricopeptide TPR2 Protein; TPR Domain Protein

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MLSRNRLRGLAALIFFVATSAGPAAAFQLPWVQKPTRPAGGAPVVQAQAADPRLMTLEEEIRKLNGMVEELNFQILQMQD
QMRRMQEDTEFRFQELEGGAGTNQGGRPEQRSERLTPPAEASQQTAAAGTLSLPPAEAQAPSQNPQVAGQQGGGGPERGA
PPSTLGTITFDQNGNVITSGAGQPVDLLRGTPTGGTDNAVVAALPHSNNPEEIYQSSYQFILSGDYKTAEAGFRQYLDMF
PEGEHAADANFWLGEAMLGQDRYREAAEVFLNANRQFPNASKSPEMLLKLGVSLAAMQQRDVACATYTEIGHRYPDVSSA
LKERVKQEQALAGC

Sequences:

>Translated_334_residues
MLSRNRLRGLAALIFFVATSAGPAAAFQLPWVQKPTRPAGGAPVVQAQAADPRLMTLEEEIRKLNGMVEELNFQILQMQD
QMRRMQEDTEFRFQELEGGAGTNQGGRPEQRSERLTPPAEASQQTAAAGTLSLPPAEAQAPSQNPQVAGQQGGGGPERGA
PPSTLGTITFDQNGNVITSGAGQPVDLLRGTPTGGTDNAVVAALPHSNNPEEIYQSSYQFILSGDYKTAEAGFRQYLDMF
PEGEHAADANFWLGEAMLGQDRYREAAEVFLNANRQFPNASKSPEMLLKLGVSLAAMQQRDVACATYTEIGHRYPDVSSA
LKERVKQEQALAGC
>Mature_334_residues
MLSRNRLRGLAALIFFVATSAGPAAAFQLPWVQKPTRPAGGAPVVQAQAADPRLMTLEEEIRKLNGMVEELNFQILQMQD
QMRRMQEDTEFRFQELEGGAGTNQGGRPEQRSERLTPPAEASQQTAAAGTLSLPPAEAQAPSQNPQVAGQQGGGGPERGA
PPSTLGTITFDQNGNVITSGAGQPVDLLRGTPTGGTDNAVVAALPHSNNPEEIYQSSYQFILSGDYKTAEAGFRQYLDMF
PEGEHAADANFWLGEAMLGQDRYREAAEVFLNANRQFPNASKSPEMLLKLGVSLAAMQQRDVACATYTEIGHRYPDVSSA
LKERVKQEQALAGC

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35991; Mature: 35991

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRNRLRGLAALIFFVATSAGPAAAFQLPWVQKPTRPAGGAPVVQAQAADPRLMTLEEE
CCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCEEHHHHH
IRKLNGMVEELNFQILQMQDQMRRMQEDTEFRFQELEGGAGTNQGGRPEQRSERLTPPAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHH
ASQQTAAAGTLSLPPAEAQAPSQNPQVAGQQGGGGPERGAPPSTLGTITFDQNGNVITSG
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECC
AGQPVDLLRGTPTGGTDNAVVAALPHSNNPEEIYQSSYQFILSGDYKTAEAGFRQYLDMF
CCCCHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC
PEGEHAADANFWLGEAMLGQDRYREAAEVFLNANRQFPNASKSPEMLLKLGVSLAAMQQR
CCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC
DVACATYTEIGHRYPDVSSALKERVKQEQALAGC
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLSRNRLRGLAALIFFVATSAGPAAAFQLPWVQKPTRPAGGAPVVQAQAADPRLMTLEEE
CCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCEEHHHHH
IRKLNGMVEELNFQILQMQDQMRRMQEDTEFRFQELEGGAGTNQGGRPEQRSERLTPPAE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHH
ASQQTAAAGTLSLPPAEAQAPSQNPQVAGQQGGGGPERGAPPSTLGTITFDQNGNVITSG
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECC
AGQPVDLLRGTPTGGTDNAVVAALPHSNNPEEIYQSSYQFILSGDYKTAEAGFRQYLDMF
CCCCHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC
PEGEHAADANFWLGEAMLGQDRYREAAEVFLNANRQFPNASKSPEMLLKLGVSLAAMQQR
CCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC
DVACATYTEIGHRYPDVSSALKERVKQEQALAGC
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA