Click here to switch to the map view.

The map label for this gene is 110635494

Identifier: 110635494

GI number: 110635494

Start: 3436183

End: 3437031

Strand: Reverse

Name: 110635494

Synonym: Meso_3165

Alternate gene names: NA

Gene position: 3437031-3436183 (Counterclockwise)

Preceding gene: 110635495

Following gene: 110635493

Centisome position: 77.89

GC content: 62.31

Gene sequence:

>849_bases
ATGTCGAGAATGATCAGGCCGATTTTTGCCTCAGTTGCCCTTGCGCTTGCAACCAGCGCCAACGGTGCAGACCTTTATGT
TCCGCCAGAGGCTCCGCTTCCGCCCCCGCCGGTTATCGAGCAGCAGCCGGTCTCGGTCGGCGGCTGGTATCTGCGCGGCG
ATATCGGCTATCGCTGGTCGGACCTGCGCGGAACGGAATACATCACCTACGGTCCGCCTCCCGGAACCAGCGAGTTCACA
ACGACCGAGCTCGATGGCGCCATGTCGCTCGGCGGTGGTATCGGCTATCAGATCACGCGCCACTTCCGCACCGATCTCAC
CGCCGATTACTGGTTCGATTCGGACTTCCGCGGCACGACGGCCGGGTTCTGCGGTGGTGTTCCCTGCACCTCGACGGACC
GGTCGTCCTACAGCGCGCTTTTGCTGATGGCCAATGCCTATGTCGATCTCGGCACCTATTACGGCTTCACGCCCTATGTG
GGTGCGGGTATCGGCGGCGCCCGCATCAAGTGGGACAGGCTTCGCAATACGATCGGCGATGATGATTTCTACCATGACGG
CGGGAAGGAATGGCGCTTTGCCTGGTCGCTTATGGCGGGCACTTCATACTGCCTGACCCAGAACCTGCAGCTCGACGCCG
GCTACCGCTATACCCGGATCCAGGGCGGCAGGATGTTCGAGTTCGGCTCGGGCGTCGGCCCCGGTTTCGACGATGGCTTC
AACGTCCATGAGGCACGCGCCGGCCTGCGCTACTCCTTCGGCGGCGCAAATGCGAATTGCGCGGTGCCGCAGACAATCGC
CTATCAGCCGGCCTATGAGCCCCCGGTAGAGCCGGTGATCTATAAGTAA

Upstream 100 bases:

>100_bases
AAAAGTTTATTAGGGTTAAGCGAGGCTTAACTTTTCTGTTGCAGCTTTCGACATGATTCAACCAGCCGGGCACGGGACGG
CTTTTGGGGGTGTTTGTGAC

Downstream 100 bases:

>100_bases
CCGCTTTTCGTCCTCGCACAATTGGCCGCCCGGTCTAGCACCGGGCGGTTTCATTTTTGCAACAGGAAAATCGGTAACCT
CCCGTTATCCTTAACTGCTG

Product: porin, opacity type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSRMIRPIFASVALALATSANGADLYVPPEAPLPPPPVIEQQPVSVGGWYLRGDIGYRWSDLRGTEYITYGPPPGTSEFT
TTELDGAMSLGGGIGYQITRHFRTDLTADYWFDSDFRGTTAGFCGGVPCTSTDRSSYSALLLMANAYVDLGTYYGFTPYV
GAGIGGARIKWDRLRNTIGDDDFYHDGGKEWRFAWSLMAGTSYCLTQNLQLDAGYRYTRIQGGRMFEFGSGVGPGFDDGF
NVHEARAGLRYSFGGANANCAVPQTIAYQPAYEPPVEPVIYK

Sequences:

>Translated_282_residues
MSRMIRPIFASVALALATSANGADLYVPPEAPLPPPPVIEQQPVSVGGWYLRGDIGYRWSDLRGTEYITYGPPPGTSEFT
TTELDGAMSLGGGIGYQITRHFRTDLTADYWFDSDFRGTTAGFCGGVPCTSTDRSSYSALLLMANAYVDLGTYYGFTPYV
GAGIGGARIKWDRLRNTIGDDDFYHDGGKEWRFAWSLMAGTSYCLTQNLQLDAGYRYTRIQGGRMFEFGSGVGPGFDDGF
NVHEARAGLRYSFGGANANCAVPQTIAYQPAYEPPVEPVIYK
>Mature_281_residues
SRMIRPIFASVALALATSANGADLYVPPEAPLPPPPVIEQQPVSVGGWYLRGDIGYRWSDLRGTEYITYGPPPGTSEFTT
TELDGAMSLGGGIGYQITRHFRTDLTADYWFDSDFRGTTAGFCGGVPCTSTDRSSYSALLLMANAYVDLGTYYGFTPYVG
AGIGGARIKWDRLRNTIGDDDFYHDGGKEWRFAWSLMAGTSYCLTQNLQLDAGYRYTRIQGGRMFEFGSGVGPGFDDGFN
VHEARAGLRYSFGGANANCAVPQTIAYQPAYEPPVEPVIYK

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017690
- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 30767; Mature: 30635

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRMIRPIFASVALALATSANGADLYVPPEAPLPPPPVIEQQPVSVGGWYLRGDIGYRWS
CCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEE
DLRGTEYITYGPPPGTSEFTTTELDGAMSLGGGIGYQITRHFRTDLTADYWFDSDFRGTT
CCCCCEEEEECCCCCCCCCEEEECCCCEECCCCCCEEEEEEHHCCCCEEEEECCCCCCCC
AGFCGGVPCTSTDRSSYSALLLMANAYVDLGTYYGFTPYVGAGIGGARIKWDRLRNTIGD
CCCCCCCCCCCCCCCCCEEEEEEEHHHEECCCCCCCCCHHCCCCCCCEEEHHHHHHCCCC
DDFYHDGGKEWRFAWSLMAGTSYCLTQNLQLDAGYRYTRIQGGRMFEFGSGVGPGFDDGF
CCEECCCCCCEEEEEEEHHCCEEEEEECEEECCCEEEEEECCCEEEECCCCCCCCCCCCC
NVHEARAGLRYSFGGANANCAVPQTIAYQPAYEPPVEPVIYK
CHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEECC
>Mature Secondary Structure 
SRMIRPIFASVALALATSANGADLYVPPEAPLPPPPVIEQQPVSVGGWYLRGDIGYRWS
CCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEE
DLRGTEYITYGPPPGTSEFTTTELDGAMSLGGGIGYQITRHFRTDLTADYWFDSDFRGTT
CCCCCEEEEECCCCCCCCCEEEECCCCEECCCCCCEEEEEEHHCCCCEEEEECCCCCCCC
AGFCGGVPCTSTDRSSYSALLLMANAYVDLGTYYGFTPYVGAGIGGARIKWDRLRNTIGD
CCCCCCCCCCCCCCCCCEEEEEEEHHHEECCCCCCCCCHHCCCCCCCEEEHHHHHHCCCC
DDFYHDGGKEWRFAWSLMAGTSYCLTQNLQLDAGYRYTRIQGGRMFEFGSGVGPGFDDGF
CCEECCCCCCEEEEEEEHHCCEEEEEECEEECCCEEEEEECCCEEEECCCCCCCCCCCCC
NVHEARAGLRYSFGGANANCAVPQTIAYQPAYEPPVEPVIYK
CHHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA