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The map label for this gene is ygiP [C]

Identifier: 110635047

GI number: 110635047

Start: 2950542

End: 2951450

Strand: Reverse

Name: ygiP [C]

Synonym: Meso_2713

Alternate gene names: 110635047

Gene position: 2951450-2950542 (Counterclockwise)

Preceding gene: 110635048

Following gene: 110635046

Centisome position: 66.89

GC content: 58.31

Gene sequence:

>909_bases
ATGGATACGTTGACGCGGATGCGCGCTTTCATCCAAGTCGCCGATGCGGAAGGATTTTCAGCGGCGGCGCGGAAATCGGG
CCGCTCAAAGGCTTTGCTTTCCAAATATGTGCGGGAACTCGAGGATGAACTGGGGGCGTTGCTGCTGAACCGCACGACCC
GGAAATTTTCGCTTACCGAAGCCGGCGGGCTTTATTACCAGCGTGCGCTCGAACTCGTACGGGAAATCGATGCGCTGTCG
GAAACCGTTCGCGAATCGGCAAGCGGTATACGTGGCCGCATAAAGCTTTCCGCCCCCCGAACCTTTGCAGACGCTCCCAT
TGGCCAGTCGCTGATCGATTTTGCGACGGCCCATCCGGAAATCACGCTCGATATTCAGCTGGATGACCGCTTTGTAGACC
TTGTGGAGGAGGGGTTCGATCTCGCGATCCGGATCACGAAGCTTGATGATTCCAGCATGATCGCGCGGCGGCTCAACCCT
TTCCGAGTACTGCTTTGCGCCTCGCCCTCCTTGATCGAGAAATATGGAAAACCGACGCATCCTCGCGAGTTGCAGAACCT
GCCATGCCTCATCGACACCAACAGCCGCTACCGGCACAACTGGCCATTTCAGGAGGGGGGCGTGCCGATAACCGTGCCGG
TATCAGGGCCGATTGAGGCGAACAGTCCCCTCGCGGTGCGCGCTGCCGCGCTGGCGGGCCTGGGCTTTGCCTTTGTTCCA
GATTTCATTGCCATGGCCGAGTTGAAGGCCGGACGGCTTGTTACCGTTCTGGACGAGTTCATTACAGACGGAGCGGGCAT
TTTTGCGGTTTATCCCCACCGGCGGTATCTGCCGGCCAAAGTGCGCGCGCTGGTCGATTTCCTCGCGCAATGGCTTAGGG
AAAATTGTGGAGCCGAGACGAAGATTTAA

Upstream 100 bases:

>100_bases
GTGCATGGCGCGCCCTTCGGCATTTCCCTCCTCGGGCCGGCAGGCAGCGACCGCCAGCTCATACGGCTCGCCTCCAAGAT
CCTCGCGGGTTCGTAGGATC

Downstream 100 bases:

>100_bases
TCCTAATTTCGCCAGGTTCGTCTAGATAATACAATTCAAGAAATCGAGGGGATGTTCAGCATGAGCGGTAGCACGGGGAA
AGCGGCGCCGGCCTGGATCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MDTLTRMRAFIQVADAEGFSAAARKSGRSKALLSKYVRELEDELGALLLNRTTRKFSLTEAGGLYYQRALELVREIDALS
ETVRESASGIRGRIKLSAPRTFADAPIGQSLIDFATAHPEITLDIQLDDRFVDLVEEGFDLAIRITKLDDSSMIARRLNP
FRVLLCASPSLIEKYGKPTHPRELQNLPCLIDTNSRYRHNWPFQEGGVPITVPVSGPIEANSPLAVRAAALAGLGFAFVP
DFIAMAELKAGRLVTVLDEFITDGAGIFAVYPHRRYLPAKVRALVDFLAQWLRENCGAETKI

Sequences:

>Translated_302_residues
MDTLTRMRAFIQVADAEGFSAAARKSGRSKALLSKYVRELEDELGALLLNRTTRKFSLTEAGGLYYQRALELVREIDALS
ETVRESASGIRGRIKLSAPRTFADAPIGQSLIDFATAHPEITLDIQLDDRFVDLVEEGFDLAIRITKLDDSSMIARRLNP
FRVLLCASPSLIEKYGKPTHPRELQNLPCLIDTNSRYRHNWPFQEGGVPITVPVSGPIEANSPLAVRAAALAGLGFAFVP
DFIAMAELKAGRLVTVLDEFITDGAGIFAVYPHRRYLPAKVRALVDFLAQWLRENCGAETKI
>Mature_302_residues
MDTLTRMRAFIQVADAEGFSAAARKSGRSKALLSKYVRELEDELGALLLNRTTRKFSLTEAGGLYYQRALELVREIDALS
ETVRESASGIRGRIKLSAPRTFADAPIGQSLIDFATAHPEITLDIQLDDRFVDLVEEGFDLAIRITKLDDSSMIARRLNP
FRVLLCASPSLIEKYGKPTHPRELQNLPCLIDTNSRYRHNWPFQEGGVPITVPVSGPIEANSPLAVRAAALAGLGFAFVP
DFIAMAELKAGRLVTVLDEFITDGAGIFAVYPHRRYLPAKVRALVDFLAQWLRENCGAETKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=31.5068493150685, Blast_Score=154, Evalue=1e-38,
Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=32.7702702702703, Blast_Score=152, Evalue=3e-38,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=33.1058020477816, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=30.2083333333333, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=29.2929292929293, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=30.6122448979592, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=28.6713286713287, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1789173, Length=299, Percent_Identity=27.0903010033445, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790011, Length=300, Percent_Identity=24.6666666666667, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788706, Length=302, Percent_Identity=24.8344370860927, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=134, Percent_Identity=27.6119402985075, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33417; Mature: 33417

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLTRMRAFIQVADAEGFSAAARKSGRSKALLSKYVRELEDELGALLLNRTTRKFSLTE
CCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
AGGLYYQRALELVREIDALSETVRESASGIRGRIKLSAPRTFADAPIGQSLIDFATAHPE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCC
ITLDIQLDDRFVDLVEEGFDLAIRITKLDDSSMIARRLNPFRVLLCASPSLIEKYGKPTH
EEEEEEECHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCEEEEEECCHHHHHHCCCCCC
PRELQNLPCLIDTNSRYRHNWPFQEGGVPITVPVSGPIEANSPLAVRAAALAGLGFAFVP
CHHHCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHH
DFIAMAELKAGRLVTVLDEFITDGAGIFAVYPHRRYLPAKVRALVDFLAQWLRENCGAET
HHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
KI
CC
>Mature Secondary Structure
MDTLTRMRAFIQVADAEGFSAAARKSGRSKALLSKYVRELEDELGALLLNRTTRKFSLTE
CCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCC
AGGLYYQRALELVREIDALSETVRESASGIRGRIKLSAPRTFADAPIGQSLIDFATAHPE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCC
ITLDIQLDDRFVDLVEEGFDLAIRITKLDDSSMIARRLNPFRVLLCASPSLIEKYGKPTH
EEEEEEECHHHHHHHHCCCCEEEEEEECCCHHHHHHCCCCEEEEEECCHHHHHHCCCCCC
PRELQNLPCLIDTNSRYRHNWPFQEGGVPITVPVSGPIEANSPLAVRAAALAGLGFAFVP
CHHHCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHH
DFIAMAELKAGRLVTVLDEFITDGAGIFAVYPHRRYLPAKVRALVDFLAQWLRENCGAET
HHHHHHHHCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
KI
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]