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The map label for this gene is dppB [H]

Identifier: 110634960

GI number: 110634960

Start: 2832376

End: 2833332

Strand: Reverse

Name: dppB [H]

Synonym: Meso_2626

Alternate gene names: 110634960

Gene position: 2833332-2832376 (Counterclockwise)

Preceding gene: 110634961

Following gene: 110634959

Centisome position: 64.21

GC content: 59.67

Gene sequence:

>957_bases
TTGCGGCTATTTGAAAGTTACGTCTTCAATCGCGTTCTGACCGCCGTAATGTCGGTTTTCGGCGCAATGTTGGTCATTGT
CATGCTGCTCAACGTGGTGCCGGGCGATCCCGCCACCGCGCTGCTTGGACCTATGGCCACGCCGGAATATGCCCGCCAGT
TTATCGCTGAAATGGGGCTCGACCAGCCAATCTATGTGCGCCTGTGGCGCTTTTTCACCCAGGTTGCCGCGGGCAATCTC
GGTACCGACGTGATTTCCGGACGCAGTGTTAATGCCATCGTCTGGGCTGCACTGCCGCACACCTTCGCGCTGGCCCTCGG
CTCGATGGCGTTGGCCTGCCTGATCGGCATTCCGGCGGGCGTTTATGGCGCGGTGCACAAAGGTTCGGTCGCCGACACGC
TGATGGCCATGATTTCAGTCGTCGTTGTGTCGGTTCCCAGCTTCATTCTAGGCATTTTCCTGCTCATCGTCTTTTCGATC
TGGCTTAACTGGCTGCCCGTGCTGGGCGTCTCCGATTCTGCGGATCTGGGCGATCAACTGGCCCGGATGGTCCTGCCGAC
GGTCGCGCTGGCGCTGGGGTGGATCGGGCTGATCGCCCGGCTCGTGCGCACCTCGATGCTGGAAGCGCTGGGGCAGAACT
ATGTCCGCACCGCCCGGGCCTATGGCCTGCGCGAAAACATGATCCACTATAAATACGCCCTCAAGAACGCCATTATTCCC
ACGCTGGCAATTATCGGCATGGGCATCGGGCGGCTGCTGGGCGGCGCGGTGCTGATCGAAATCATCTTCGCGCGCCAGGG
ACTGGGAAGCGTGCTTTACGCTGCCTTGCAGGCGCGCAACTTTTCCGTGCTGCAGGGCTCGGTTTTCATCGTCGTTGTCA
TTTTCGTCGCCATCAATCTGCTGACTGAACTCAGCTATTCGTTCTTCGACCCTCGTATCCGATACAACCGGCGGTGA

Upstream 100 bases:

>100_bases
TCACGATATCATCCCCCTCAAGCCGCCACGCTGAGATGGCGGGTGGAAAAATGCGCGCTCTGTTTCTCGCATCATGCGCT
GCAAACGTGAGGGGAATTGC

Downstream 100 bases:

>100_bases
GTATGACGAGAAACATCTCCATTCTTCTCAATACGCTGCGCCGGACGGCGCAGTATCCAAGCGGCGCCATCGGCCTGGCG
CTAGTGACGACAATCCTTTT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MRLFESYVFNRVLTAVMSVFGAMLVIVMLLNVVPGDPATALLGPMATPEYARQFIAEMGLDQPIYVRLWRFFTQVAAGNL
GTDVISGRSVNAIVWAALPHTFALALGSMALACLIGIPAGVYGAVHKGSVADTLMAMISVVVVSVPSFILGIFLLIVFSI
WLNWLPVLGVSDSADLGDQLARMVLPTVALALGWIGLIARLVRTSMLEALGQNYVRTARAYGLRENMIHYKYALKNAIIP
TLAIIGMGIGRLLGGAVLIEIIFARQGLGSVLYAALQARNFSVLQGSVFIVVVIFVAINLLTELSYSFFDPRIRYNRR

Sequences:

>Translated_318_residues
MRLFESYVFNRVLTAVMSVFGAMLVIVMLLNVVPGDPATALLGPMATPEYARQFIAEMGLDQPIYVRLWRFFTQVAAGNL
GTDVISGRSVNAIVWAALPHTFALALGSMALACLIGIPAGVYGAVHKGSVADTLMAMISVVVVSVPSFILGIFLLIVFSI
WLNWLPVLGVSDSADLGDQLARMVLPTVALALGWIGLIARLVRTSMLEALGQNYVRTARAYGLRENMIHYKYALKNAIIP
TLAIIGMGIGRLLGGAVLIEIIFARQGLGSVLYAALQARNFSVLQGSVFIVVVIFVAINLLTELSYSFFDPRIRYNRR
>Mature_318_residues
MRLFESYVFNRVLTAVMSVFGAMLVIVMLLNVVPGDPATALLGPMATPEYARQFIAEMGLDQPIYVRLWRFFTQVAAGNL
GTDVISGRSVNAIVWAALPHTFALALGSMALACLIGIPAGVYGAVHKGSVADTLMAMISVVVVSVPSFILGIFLLIVFSI
WLNWLPVLGVSDSADLGDQLARMVLPTVALALGWIGLIARLVRTSMLEALGQNYVRTARAYGLRENMIHYKYALKNAIIP
TLAIIGMGIGRLLGGAVLIEIIFARQGLGSVLYAALQARNFSVLQGSVFIVVVIFVAINLLTELSYSFFDPRIRYNRR

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=32.1543408360129, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=32.9376854599407, Blast_Score=181, Evalue=8e-47,
Organism=Escherichia coli, GI1789888, Length=314, Percent_Identity=34.0764331210191, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=34.3373493975904, Blast_Score=158, Evalue=4e-40,
Organism=Escherichia coli, GI1787497, Length=311, Percent_Identity=30.2250803858521, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1788504, Length=282, Percent_Identity=28.3687943262411, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=24.9056603773585, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34496; Mature: 34496

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]