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The map label for this gene is araC [C]

Identifier: 110634913

GI number: 110634913

Start: 2760267

End: 2761226

Strand: Reverse

Name: araC [C]

Synonym: Meso_2572

Alternate gene names: 110634913

Gene position: 2761226-2760267 (Counterclockwise)

Preceding gene: 110634915

Following gene: 110634912

Centisome position: 62.58

GC content: 58.75

Gene sequence:

>960_bases
ATGCCAATGGACAGAGCAGCCAAAAACTTGGACAATAAGAACATGACATCAATCCCGATTTACGCACTCTACGGGGAGGA
GGACTATCCGGACCAGGCCGACTGGCTGCATTGGGAAACCATCACCTCCCGTAGCCGTCTTCACGGTTTCCGGATTGCTC
CGCACCGGCATGAACAGTTCTTCCAATTTCTCTTTTTGCGGCGGGGTCGTGCGCGCGCCTTGATCGATGGAGAGGATCGC
GACCTCGGCCCGGTGTCGGTGGTCGCTGTTCCTGCCCTTTCGGTTCACGGTTTCCTCTTCAGCGAGGATGTCGACGGCGT
GGTGCTTACCTTCTTCGAACGGGATGTTCGAACCCTGGCTGCCGAAATCCCCCAAATGGAGGAATGGCTGCTGAGGCCTT
TCATCGTTCAGATGAACGAAGAGCATGCTTCGGAGTTGCACAATACGATCCGCGGGCTCATTTCGGAGGCGGACAGCCGG
AGGCCAGGGAGAGCTGCCGCCATACGCGCGCAGATAACGCTTCTTCTCGTCTCGCTTCTGCGCCTCGGGATGGCGGCCGC
CTCGCATGATCGAAGCCAGCTGGGAAGGGCCGCACAGCTTGCACGCGCCTTTCTGGCACTGGTGGAACGGGAATTTCGCG
AGACGAGGGCCATCCCACATTACGCCCATGCACTCGGCATCACGCCTACCCACCTCAACCGTGTGTGCCGGCAGGTTCTG
GGCCGTCCGGCGCTTTCCGTCATCGAGCGCCGCATTGTGTTAGAGGCAAAGCGCTATCTGCAGTTCTCGACGTTGAGCAT
CAAAGAGATAGGTATCGTTCTAGGCTATCCAGATCCCGCTTATTTCTCGCGCTTCTTTCAGCGCGCGACCGGCTACGCCC
CAAGCCGCTTTCGTGCGCCGAACACGGCAGCTGAGAACCTTTCGCCAAGAGAGGTGTTGGAACAGGCATGCACGAGATAG

Upstream 100 bases:

>100_bases
GTGAGCCCCGCAGGCCCAGCACCGATGATAGCAACCTGTACGCGCATTTTCTCTCTGGTCCACTTTCCTCTTGTGGGAAG
ACATAAGCTTTCAGGCCGAA

Downstream 100 bases:

>100_bases
TCGAGCCGCAAAGATTTTTCCTGGAGGAAGGGCCCGATGTGCCCAACAACCCCGATCTGCCGGTGCTGATCTACCCGCAG
GTGCTGGGCGATCGCGTCAC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulatory Protein; AraC-Family Transcriptional Regulator; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MPMDRAAKNLDNKNMTSIPIYALYGEEDYPDQADWLHWETITSRSRLHGFRIAPHRHEQFFQFLFLRRGRARALIDGEDR
DLGPVSVVAVPALSVHGFLFSEDVDGVVLTFFERDVRTLAAEIPQMEEWLLRPFIVQMNEEHASELHNTIRGLISEADSR
RPGRAAAIRAQITLLLVSLLRLGMAAASHDRSQLGRAAQLARAFLALVEREFRETRAIPHYAHALGITPTHLNRVCRQVL
GRPALSVIERRIVLEAKRYLQFSTLSIKEIGIVLGYPDPAYFSRFFQRATGYAPSRFRAPNTAAENLSPREVLEQACTR

Sequences:

>Translated_319_residues
MPMDRAAKNLDNKNMTSIPIYALYGEEDYPDQADWLHWETITSRSRLHGFRIAPHRHEQFFQFLFLRRGRARALIDGEDR
DLGPVSVVAVPALSVHGFLFSEDVDGVVLTFFERDVRTLAAEIPQMEEWLLRPFIVQMNEEHASELHNTIRGLISEADSR
RPGRAAAIRAQITLLLVSLLRLGMAAASHDRSQLGRAAQLARAFLALVEREFRETRAIPHYAHALGITPTHLNRVCRQVL
GRPALSVIERRIVLEAKRYLQFSTLSIKEIGIVLGYPDPAYFSRFFQRATGYAPSRFRAPNTAAENLSPREVLEQACTR
>Mature_318_residues
PMDRAAKNLDNKNMTSIPIYALYGEEDYPDQADWLHWETITSRSRLHGFRIAPHRHEQFFQFLFLRRGRARALIDGEDRD
LGPVSVVAVPALSVHGFLFSEDVDGVVLTFFERDVRTLAAEIPQMEEWLLRPFIVQMNEEHASELHNTIRGLISEADSRR
PGRAAAIRAQITLLLVSLLRLGMAAASHDRSQLGRAAQLARAFLALVEREFRETRAIPHYAHALGITPTHLNRVCRQVLG
RPALSVIERRIVLEAKRYLQFSTLSIKEIGIVLGYPDPAYFSRFFQRATGYAPSRFRAPNTAAENLSPREVLEQACTR

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36281; Mature: 36150

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMDRAAKNLDNKNMTSIPIYALYGEEDYPDQADWLHWETITSRSRLHGFRIAPHRHEQF
CCCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
FQFLFLRRGRARALIDGEDRDLGPVSVVAVPALSVHGFLFSEDVDGVVLTFFERDVRTLA
HHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHH
AEIPQMEEWLLRPFIVQMNEEHASELHNTIRGLISEADSRRPGRAAAIRAQITLLLVSLL
HHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RLGMAAASHDRSQLGRAAQLARAFLALVEREFRETRAIPHYAHALGITPTHLNRVCRQVL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHH
GRPALSVIERRIVLEAKRYLQFSTLSIKEIGIVLGYPDPAYFSRFFQRATGYAPSRFRAP
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHHHHHHCCCCCCCCCCC
NTAAENLSPREVLEQACTR
CCHHHCCCHHHHHHHHHCC
>Mature Secondary Structure 
PMDRAAKNLDNKNMTSIPIYALYGEEDYPDQADWLHWETITSRSRLHGFRIAPHRHEQF
CCCHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH
FQFLFLRRGRARALIDGEDRDLGPVSVVAVPALSVHGFLFSEDVDGVVLTFFERDVRTLA
HHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHH
AEIPQMEEWLLRPFIVQMNEEHASELHNTIRGLISEADSRRPGRAAAIRAQITLLLVSLL
HHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RLGMAAASHDRSQLGRAAQLARAFLALVEREFRETRAIPHYAHALGITPTHLNRVCRQVL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHH
GRPALSVIERRIVLEAKRYLQFSTLSIKEIGIVLGYPDPAYFSRFFQRATGYAPSRFRAP
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHHHHHHCCCCCCCCCCC
NTAAENLSPREVLEQACTR
CCHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA