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The map label for this gene is degU [H]

Identifier: 110634915

GI number: 110634915

Start: 2762674

End: 2763435

Strand: Reverse

Name: degU [H]

Synonym: Meso_2574

Alternate gene names: 110634915

Gene position: 2763435-2762674 (Counterclockwise)

Preceding gene: 110634916

Following gene: 110634913

Centisome position: 62.63

GC content: 56.56

Gene sequence:

>762_bases
GTGGAACTAGAAAATGGCTTTTCACAGGCGCCAGGCCTAAAATCGGCGTCTACATTGCCAGTCGACTTTCGGGCGGGTGG
CAATTTCACAACGGAGGCGGAACTCGACAGAGGGACAAAGGAGGATCTGATACTTTTGATCGACCCCAGGGCGTTAGGCA
GGGAATGCCTGGCGCAAAGTTTGAGGACCCAAAGTCCTGAAATGGAGATCGTTGCCGTCGGCTCGGCCGACGAGTGGCGT
AAACTGGGGGATAGCAGGGAGCCGTCGGCGGTGCTCTTCATCGTCGGCAGCAGGAAGATCGCCGATTCAGGCGTTCGCTC
CGAAATACAAGATCTTGCCGGGATTTTTGAAGACAGCCCGGTCATCGTCGTCGCTGACTCGGACGATCTCGGTCAGATCT
TGACCGCGCTCGATTCCGGCGTACGCGGCTACATACCGAGCAATGTGGGTGTGAGCGTGGCTGCCGAGGCAATTCACCTT
GCCCAGGTGGGTGGCGTCTTCGTTCCCGCAAGTGGTGTGCTTGCGATGCGCGATGTCATCAATTCGACCACCAATCGCAC
TGCAGGGCTCGGAAACCTGTTCACCGCGCGTGAGGCAGAGGTAGCCGAAGCCCTAAGACGCGGAAAGGCCAACAAGATCA
TCGCCTATGAGCTGCAACTTTGCGAGAGCACGGTGAAAGTGCACATCCGCAATATCATGAAGAAGCTCAATGCGACCAAT
CGCACGGAGGTAGCTTACAAGATCCGAGAAATGATGTCCTGA

Upstream 100 bases:

>100_bases
TCCGGAGCCGCTGCAAACGTACGGTGGCTGGGACGGGACGATGCTTTCGTACGTCAGCTGCATGCGGCTTGTTTATTCAC
ACAAGTAAGGGGAGCGTATT

Downstream 100 bases:

>100_bases
CCGACAACCATGACACAAACAATAATTACGACGGAGCGCGGGGGTTTTCGGTTAGGCGTACCGTCATTGATTCTGATTGT
ACCGGGATTGGCTGGCCTAA

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MELENGFSQAPGLKSASTLPVDFRAGGNFTTEAELDRGTKEDLILLIDPRALGRECLAQSLRTQSPEMEIVAVGSADEWR
KLGDSREPSAVLFIVGSRKIADSGVRSEIQDLAGIFEDSPVIVVADSDDLGQILTALDSGVRGYIPSNVGVSVAAEAIHL
AQVGGVFVPASGVLAMRDVINSTTNRTAGLGNLFTAREAEVAEALRRGKANKIIAYELQLCESTVKVHIRNIMKKLNATN
RTEVAYKIREMMS

Sequences:

>Translated_253_residues
MELENGFSQAPGLKSASTLPVDFRAGGNFTTEAELDRGTKEDLILLIDPRALGRECLAQSLRTQSPEMEIVAVGSADEWR
KLGDSREPSAVLFIVGSRKIADSGVRSEIQDLAGIFEDSPVIVVADSDDLGQILTALDSGVRGYIPSNVGVSVAAEAIHL
AQVGGVFVPASGVLAMRDVINSTTNRTAGLGNLFTAREAEVAEALRRGKANKIIAYELQLCESTVKVHIRNIMKKLNATN
RTEVAYKIREMMS
>Mature_253_residues
MELENGFSQAPGLKSASTLPVDFRAGGNFTTEAELDRGTKEDLILLIDPRALGRECLAQSLRTQSPEMEIVAVGSADEWR
KLGDSREPSAVLFIVGSRKIADSGVRSEIQDLAGIFEDSPVIVVADSDDLGQILTALDSGVRGYIPSNVGVSVAAEAIHL
AQVGGVFVPASGVLAMRDVINSTTNRTAGLGNLFTAREAEVAEALRRGKANKIIAYELQLCESTVKVHIRNIMKKLNATN
RTEVAYKIREMMS

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27158; Mature: 27158

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELENGFSQAPGLKSASTLPVDFRAGGNFTTEAELDRGTKEDLILLIDPRALGRECLAQS
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHH
LRTQSPEMEIVAVGSADEWRKLGDSREPSAVLFIVGSRKIADSGVRSEIQDLAGIFEDSP
HHCCCCCEEEEEECCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
VIVVADSDDLGQILTALDSGVRGYIPSNVGVSVAAEAIHLAQVGGVFVPASGVLAMRDVI
EEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCHHHHHHHH
NSTTNRTAGLGNLFTAREAEVAEALRRGKANKIIAYELQLCESTVKVHIRNIMKKLNATN
HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCC
RTEVAYKIREMMS
HHHHHHHHHHHHC
>Mature Secondary Structure
MELENGFSQAPGLKSASTLPVDFRAGGNFTTEAELDRGTKEDLILLIDPRALGRECLAQS
CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHHHHH
LRTQSPEMEIVAVGSADEWRKLGDSREPSAVLFIVGSRKIADSGVRSEIQDLAGIFEDSP
HHCCCCCEEEEEECCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
VIVVADSDDLGQILTALDSGVRGYIPSNVGVSVAAEAIHLAQVGGVFVPASGVLAMRDVI
EEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEECCCCHHHHHHHH
NSTTNRTAGLGNLFTAREAEVAEALRRGKANKIIAYELQLCESTVKVHIRNIMKKLNATN
HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCC
RTEVAYKIREMMS
HHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7765823 [H]