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The map label for this gene is omp25 [H]

Identifier: 110634908

GI number: 110634908

Start: 2755849

End: 2756553

Strand: Reverse

Name: omp25 [H]

Synonym: Meso_2567

Alternate gene names: 110634908

Gene position: 2756553-2755849 (Counterclockwise)

Preceding gene: 110634909

Following gene: 110634899

Centisome position: 62.47

GC content: 53.33

Gene sequence:

>705_bases
ATGCGATCCATTTTATCCCTTGCGTTTATCGGCCTGTTCGGCACTTCTGCTGGCTTTGCCGCGGACGCCATCATTCAACG
GGACGATCCAGTCCCGGTGGCGCCTGTGGTCGCAGCTCCGGCCAAGTCCTATGACTGGAGCGGCATTTATCTTGGTGTTG
ACGGCGGCTATAAGTGGAACAGCCTTAAGTTTGATCCCAATTCCGTCGCCAAGAAGGCAGGCATCAAAGGTGATGCCTTC
AAGATGAACAGTACCTTCGGTGGTGTTTATCTGGGGTACAACTATCAGATCGATAACTGGGTTATCGGCGCGGAAGGGGA
CGCTCAACTCTATTTCGGTGGTAAAGACAAGGCCGCGGCCTCCGGGAACGGCCGTTTCGCAGCATCCAGGGGATTCGGAT
CGGCGCGTGTGCGTCTCGGCTATGCGATGGATCGCTTCCTGCCCTATGTCACCGGCGGTGCCGCCTTCGAGAACCTGGAA
ATCTCCTCAAAAAAGGATGGTAAAGTCGTTGCTCGGGATAACAAGACTAGAGTGGGTTATACGCTCGGCGCGGGTCTTGA
TTACGCCATAACCGAAAAATGGATCGGCAAGGTCGAGTACCAGTTTATGGATTTCGGAAAGAAGTCTTACGATCTCGATA
TTGGATCGGCTGATTTGAGCTCGCATTCGCACACAATGCGGGTTGGTTTGTCCTATAAGTTCTAG

Upstream 100 bases:

>100_bases
TTGTGGGCCGTGCATATGCGGCTCGTTCTGCAGGGTTGATCTGTATTTCTTATGCGTTTATAAGCCGGCGCGTTCGTAAA
CATAGTTAAGAGAGGTTTTC

Downstream 100 bases:

>100_bases
AGCCTAGCATATCCGCGAAGAGGCCCACCTGCCTCTTTGCGGATATTTCTTCACCGGCGTAGATGTTCTAAAACATTTAT
CATGCTGACGCCGACCGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRSILSLAFIGLFGTSAGFAADAIIQRDDPVPVAPVVAAPAKSYDWSGIYLGVDGGYKWNSLKFDPNSVAKKAGIKGDAF
KMNSTFGGVYLGYNYQIDNWVIGAEGDAQLYFGGKDKAAASGNGRFAASRGFGSARVRLGYAMDRFLPYVTGGAAFENLE
ISSKKDGKVVARDNKTRVGYTLGAGLDYAITEKWIGKVEYQFMDFGKKSYDLDIGSADLSSHSHTMRVGLSYKF

Sequences:

>Translated_234_residues
MRSILSLAFIGLFGTSAGFAADAIIQRDDPVPVAPVVAAPAKSYDWSGIYLGVDGGYKWNSLKFDPNSVAKKAGIKGDAF
KMNSTFGGVYLGYNYQIDNWVIGAEGDAQLYFGGKDKAAASGNGRFAASRGFGSARVRLGYAMDRFLPYVTGGAAFENLE
ISSKKDGKVVARDNKTRVGYTLGAGLDYAITEKWIGKVEYQFMDFGKKSYDLDIGSADLSSHSHTMRVGLSYKF
>Mature_234_residues
MRSILSLAFIGLFGTSAGFAADAIIQRDDPVPVAPVVAAPAKSYDWSGIYLGVDGGYKWNSLKFDPNSVAKKAGIKGDAF
KMNSTFGGVYLGYNYQIDNWVIGAEGDAQLYFGGKDKAAASGNGRFAASRGFGSARVRLGYAMDRFLPYVTGGAAFENLE
ISSKKDGKVVARDNKTRVGYTLGAGLDYAITEKWIGKVEYQFMDFGKKSYDLDIGSADLSSHSHTMRVGLSYKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the omp25/ropB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR000498 [H]

Pfam domain/function: PF01389 OmpA_membrane [H]

EC number: NA

Molecular weight: Translated: 25225; Mature: 25225

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSILSLAFIGLFGTSAGFAADAIIQRDDPVPVAPVVAAPAKSYDWSGIYLGVDGGYKWN
CCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCEEEEECCCCCEEC
SLKFDPNSVAKKAGIKGDAFKMNSTFGGVYLGYNYQIDNWVIGAEGDAQLYFGGKDKAAA
EEEECHHHHHHHCCCCCCEEEECCCCCEEEEEEEEEECCEEEECCCCEEEEECCCCCCCC
SGNGRFAASRGFGSARVRLGYAMDRFLPYVTGGAAFENLEISSKKDGKVVARDNKTRVGY
CCCCCEEEECCCCCEEEEEEHHHHHHHHEEECCCEEEEEEECCCCCCEEEEECCCEEEEE
TLGAGLDYAITEKWIGKVEYQFMDFGKKSYDLDIGSADLSSHSHTMRVGLSYKF
EECCCCCHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure
MRSILSLAFIGLFGTSAGFAADAIIQRDDPVPVAPVVAAPAKSYDWSGIYLGVDGGYKWN
CCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEECCCCCCCCCEEEEECCCCCEEC
SLKFDPNSVAKKAGIKGDAFKMNSTFGGVYLGYNYQIDNWVIGAEGDAQLYFGGKDKAAA
EEEECHHHHHHHCCCCCCEEEECCCCCEEEEEEEEEECCEEEECCCCEEEEECCCCCCCC
SGNGRFAASRGFGSARVRLGYAMDRFLPYVTGGAAFENLEISSKKDGKVVARDNKTRVGY
CCCCCEEEECCCCCEEEEEEHHHHHHHHEEECCCEEEEEEECCCCCCEEEEECCCEEEEE
TLGAGLDYAITEKWIGKVEYQFMDFGKKSYDLDIGSADLSSHSHTMRVGLSYKF
EECCCCCHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7896724 [H]