BacMap

Definition	Mesorhizobium sp. BNC1, complete genome.
Accession	NC_008254
Length	4,412,446

Click here to switch to the map view.

The map label for this gene is yxbG [H]

Identifier: 110634834

GI number: 110634834

Start: 2670785

End: 2671546

Strand: Reverse

Name: yxbG [H]

Synonym: Meso_2493

Alternate gene names: 110634834

Gene position: 2671546-2670785 (Counterclockwise)

Preceding gene: 110634835

Following gene: 110634829

Centisome position: 60.55

GC content: 64.04

Gene sequence:

>762_bases
ATGGGAAGGCTTCAGGAAAAAACCTGCATCGTCACCGGCGGTGCAGGGAGCATCGGCAGCGCGACCGCGCGCCTTTTTCT
TCAAGAGGGCGCGCGGGTGCTTCTTGTCGACCGGGATGCGGCAGGCCTCCAGCGCCTGGCAGCCGAGCTCGGCGGGCGCG
AGCGGCTGGCCTGGGCGGCGGCCGACGTTTCCGACGCCGCGCAAACAGCCGCTTATGTGGAGAAGGCTGTCCAGACCTTC
GGTCCCGTCGACGTTCTGTTCTCGAATGCCGGAAATTTCGGTGTCGTCCGCCCGATTGCCGACTATCCCGATGAGGTGTT
CGAGGCGGTAATGGCGGTGCATGTGCGGGGGGCCTATCTCGCTGCAAAGCACACGGTTCCGAAGATGCGCGATGGCGGCT
CCATCATCATTACTTCGAGCGTGGCCGGGGTGAGGGGAGATGCGGGCGTTTATGCCTACATCACAGCAAAACATGCCCAG
GTCGGCCTGATGCGGTGCCTTGCCAAGGAGCTCGCACCACGCGGCATCCGCGTCAACACCATCCATCCGGGGCCGGTCGA
GAATGGATTTCAGCTCTCCGTGGAGGAGGGTGTGGGCAAGGCGCTGGACGTCGACGGGGCGGAATTCTTCAACCGCCTCA
TTCCGCTTGCCCGCCATGCCACGCCTCAGGAAATCGCCCGCTCGGTGCTCTACCTCGCCTCGGACGAATCGAGTTTCACG
ACCGGCACCACACTGATGGTGGACGGCGGCATGAGCGTGTGA

Upstream 100 bases:

>100_bases
TGGGGCCGCTTCGGCGGCTCCGCCGGCATTCACGAGTTCACGGAACTGCGCTGGGTGACGATCCAGGACGGTCCCTTGCA
CTATCCGTTCTAGGGCGGGC

Downstream 100 bases:

>100_bases
AACGGCTGCTAGCCTGGTTGCGGCCTGGCGCTTATCGGAACAGCGTCTCGATGTACTCCGCGCCGATACCGACCTTCTCA
TAGTGGTTGCGGCACAGCTC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MGRLQEKTCIVTGGAGSIGSATARLFLQEGARVLLVDRDAAGLQRLAAELGGRERLAWAAADVSDAAQTAAYVEKAVQTF
GPVDVLFSNAGNFGVVRPIADYPDEVFEAVMAVHVRGAYLAAKHTVPKMRDGGSIIITSSVAGVRGDAGVYAYITAKHAQ
VGLMRCLAKELAPRGIRVNTIHPGPVENGFQLSVEEGVGKALDVDGAEFFNRLIPLARHATPQEIARSVLYLASDESSFT
TGTTLMVDGGMSV

Sequences:

>Translated_253_residues
MGRLQEKTCIVTGGAGSIGSATARLFLQEGARVLLVDRDAAGLQRLAAELGGRERLAWAAADVSDAAQTAAYVEKAVQTF
GPVDVLFSNAGNFGVVRPIADYPDEVFEAVMAVHVRGAYLAAKHTVPKMRDGGSIIITSSVAGVRGDAGVYAYITAKHAQ
VGLMRCLAKELAPRGIRVNTIHPGPVENGFQLSVEEGVGKALDVDGAEFFNRLIPLARHATPQEIARSVLYLASDESSFT
TGTTLMVDGGMSV
>Mature_252_residues
GRLQEKTCIVTGGAGSIGSATARLFLQEGARVLLVDRDAAGLQRLAAELGGRERLAWAAADVSDAAQTAAYVEKAVQTFG
PVDVLFSNAGNFGVVRPIADYPDEVFEAVMAVHVRGAYLAAKHTVPKMRDGGSIIITSSVAGVRGDAGVYAYITAKHAQV
GLMRCLAKELAPRGIRVNTIHPGPVENGFQLSVEEGVGKALDVDGAEFFNRLIPLARHATPQEIARSVLYLASDESSFTT
GTTLMVDGGMSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=32.4, Blast_Score=118, Evalue=5e-27,
Organism=Homo sapiens, GI66933014, Length=258, Percent_Identity=34.8837209302326, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI40254992, Length=252, Percent_Identity=30.952380952381, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=32.2834645669291, Blast_Score=98, Evalue=7e-21,
Organism=Homo sapiens, GI59889578, Length=234, Percent_Identity=29.4871794871795, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=30.2681992337165, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=28.968253968254, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=31.7073170731707, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=28.4584980237154, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=34.0659340659341, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI33667109, Length=198, Percent_Identity=31.3131313131313, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI19923817, Length=272, Percent_Identity=28.6764705882353, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI31542939, Length=237, Percent_Identity=30.379746835443, Blast_Score=78, Evalue=6e-15,
Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=39.4495412844037, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=29.9610894941634, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI20149619, Length=236, Percent_Identity=26.6949152542373, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI4504505, Length=233, Percent_Identity=27.8969957081545, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI4503817, Length=231, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254986, Length=139, Percent_Identity=32.3741007194245, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI87082100, Length=263, Percent_Identity=36.1216730038023, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI1789378, Length=254, Percent_Identity=31.496062992126, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI2367365, Length=253, Percent_Identity=32.8063241106719, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787335, Length=252, Percent_Identity=31.7460317460317, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=32.4110671936759, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790717, Length=253, Percent_Identity=30.8300395256917, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=31.0756972111554, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1788459, Length=256, Percent_Identity=31.640625, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=28.4046692607004, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787905, Length=254, Percent_Identity=29.1338582677165, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787526, Length=251, Percent_Identity=28.2868525896414, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=29.5719844357977, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082160, Length=259, Percent_Identity=27.7992277992278, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1788891, Length=263, Percent_Identity=27.3764258555133, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=32.1285140562249, Blast_Score=109, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=30.0395256916996, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=30.952380952381, Blast_Score=102, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=32.1428571428571, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=28.4644194756554, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=31.5789473684211, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=28.030303030303, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17538480, Length=278, Percent_Identity=30.9352517985612, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562904, Length=271, Percent_Identity=29.8892988929889, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=30.2788844621514, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17551412, Length=275, Percent_Identity=29.0909090909091, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=273, Percent_Identity=31.5018315018315, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=30.1470588235294, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=272, Percent_Identity=28.6764705882353, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=31.8725099601594, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17562990, Length=266, Percent_Identity=28.1954887218045, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=270, Percent_Identity=31.1111111111111, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560676, Length=256, Percent_Identity=28.515625, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=27.6515151515151, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=268, Percent_Identity=28.7313432835821, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17538486, Length=276, Percent_Identity=28.9855072463768, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=274, Percent_Identity=29.1970802919708, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=271, Percent_Identity=27.3062730627306, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=197, Percent_Identity=30.4568527918782, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=25.6603773584906, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=28.7937743190661, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=187, Percent_Identity=28.8770053475936, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=271, Percent_Identity=26.9372693726937, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=275, Percent_Identity=28.3636363636364, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=27.4809160305344, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=195, Percent_Identity=27.1794871794872, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=186, Percent_Identity=25.2688172043011, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=202, Percent_Identity=28.2178217821782, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=32.156862745098, Blast_Score=97, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6322861, Length=200, Percent_Identity=32.5, Blast_Score=83, Evalue=5e-17,
Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=34.6613545816733, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI21357041, Length=254, Percent_Identity=33.8582677165354, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=30.1960784313725, Blast_Score=114, Evalue=7e-26,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=33.4677419354839, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24639444, Length=257, Percent_Identity=30.7392996108949, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI28571526, Length=257, Percent_Identity=32.6848249027237, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24643142, Length=258, Percent_Identity=29.0697674418605, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24644337, Length=258, Percent_Identity=32.1705426356589, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=27.8625954198473, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI18859837, Length=190, Percent_Identity=30, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI28571387, Length=199, Percent_Identity=27.6381909547739, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21358495, Length=207, Percent_Identity=26.5700483091787, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26586; Mature: 26454

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRLQEKTCIVTGGAGSIGSATARLFLQEGARVLLVDRDAAGLQRLAAELGGRERLAWAA
CCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCHHEEEEC
ADVSDAAQTAAYVEKAVQTFGPVDVLFSNAGNFGVVRPIADYPDEVFEAVMAVHVRGAYL
CCHHHHHHHHHHHHHHHHHCCCHHHEECCCCCCEEECCCCCCCHHHHHHHHHHHHCCCEE
AAKHTVPKMRDGGSIIITSSVAGVRGDAGVYAYITAKHAQVGLMRCLAKELAPRGIRVNT
EHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEE
IHPGPVENGFQLSVEEGVGKALDVDGAEFFNRLIPLARHATPQEIARSVLYLASDESSFT
ECCCCCCCCEEEEHHHCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCC
TGTTLMVDGGMSV
CCEEEEECCCCCC
>Mature Secondary Structure 
GRLQEKTCIVTGGAGSIGSATARLFLQEGARVLLVDRDAAGLQRLAAELGGRERLAWAA
CCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCHHEEEEC
ADVSDAAQTAAYVEKAVQTFGPVDVLFSNAGNFGVVRPIADYPDEVFEAVMAVHVRGAYL
CCHHHHHHHHHHHHHHHHHCCCHHHEECCCCCCEEECCCCCCCHHHHHHHHHHHHCCCEE
AAKHTVPKMRDGGSIIITSSVAGVRGDAGVYAYITAKHAQVGLMRCLAKELAPRGIRVNT
EHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEE
IHPGPVENGFQLSVEEGVGKALDVDGAEFFNRLIPLARHATPQEIARSVLYLASDESSFT
ECCCCCCCCEEEEHHHCCCCEECCCHHHHHHHHHHHHHCCCHHHHHHHHHEEECCCCCCC
TGTTLMVDGGMSV
CCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]