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The map label for this gene is araC [C]

Identifier: 110634829

GI number: 110634829

Start: 2666125

End: 2666988

Strand: Reverse

Name: araC [C]

Synonym: Meso_2488

Alternate gene names: 110634829

Gene position: 2666988-2666125 (Counterclockwise)

Preceding gene: 110634834

Following gene: 110634827

Centisome position: 60.44

GC content: 64.35

Gene sequence:

>864_bases
ATGAACCGATGGCAGAGGCCGCCACCGGATCCGGAGGTCCAACTTCTCAAGGGGGAGCTGGCGGCCAGCGAGTGGACCTT
TTCCGAATCCGGCTATCGCAGCTTCATATTTCTTTCCGGCAGCGGATCGGTGCGCAGCGGCGATGGAGAGGTGCCTTTCG
CCGCTCCGTGCCTAATCTGGCTGCAGGCCAGACGCGGCGGCAGCTTGCGGGCGAATGCGGGCTCCCGCGGGGTCTCTCTG
TCGGTGTCCGAAATCAGCTTCGCGCGAGCCGTTGGCATGGGCCCGAACGCACGCGCTATCCGCGAGGCGCTGTCGCGGCC
GCTCCTCGTTGTGAAGCTCGAATCAAAGCAGGCCCGGCGGCTGGCGGACAGCGTCGAGGGTATTCTGGAGGAGGGCATGC
AAGACTGGCCCGGCATGGATGACGCCGTGCGGCACAGGCTGGCTCTTCTGCTGATCGGCGCCTGGCGGCTTTCAGGACCG
GTCATGCGCGAAGCGCAGCCACTGCCGCGCACGATCATGCATCGCTTCCTGCACGCGGTGGAACTGCACATGCGCGAGCA
CTGGACGATCGCGCGCTATGCGCAGGAAGTTGGCATCACCGCCGAATGTCTCAACGCCACGGTCAGGCGCGTGACGGGCC
GCTCGCCGCTGGCTATCGTACATGCGCGGCTGACTCAGGAGGCAATCAGCCTTCTCGACAGCAGCAATCTTCCGATCGCC
GACATAGCCGAGACGCTAGGATTTCACGATCCGGCCTATTTCAGCCGCTTCTTCAAGCGCCAGACCGGGCGCTCACCGAA
TAAACACCGTCAGAATTCCGCACTGCGCTCGCATAGCGGTCATTCCTTCGCTGCCTGGCCGTGA

Upstream 100 bases:

>100_bases
TATAATCCGACACAAGCTAAGGCAGTGGTTCAAGGGTAAGAATAGACATTATCGGCCTTTTTTTGTACTTTTCATGGTTG
TGACGGGGAGGGAAAATATA

Downstream 100 bases:

>100_bases
ACAGCACGCGCAGCGCCGACCGTTTCAGCCGTCGCGTTCCCGCAGGTCATGCGTTCTTAAATCTGCCCAAGGAAATACCG
GCTGAATCTGCGCGTGGCAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Helix-Turn-Helix Domain-Containing Protein; Regulator Of 4HPA-Hydroxylase Operon; Transcriptional Regulatory Protein; PobR Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Arac Family; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC-Family Regulatory Protein; Transcription Regulator AraC-Type; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MNRWQRPPPDPEVQLLKGELAASEWTFSESGYRSFIFLSGSGSVRSGDGEVPFAAPCLIWLQARRGGSLRANAGSRGVSL
SVSEISFARAVGMGPNARAIREALSRPLLVVKLESKQARRLADSVEGILEEGMQDWPGMDDAVRHRLALLLIGAWRLSGP
VMREAQPLPRTIMHRFLHAVELHMREHWTIARYAQEVGITAECLNATVRRVTGRSPLAIVHARLTQEAISLLDSSNLPIA
DIAETLGFHDPAYFSRFFKRQTGRSPNKHRQNSALRSHSGHSFAAWP

Sequences:

>Translated_287_residues
MNRWQRPPPDPEVQLLKGELAASEWTFSESGYRSFIFLSGSGSVRSGDGEVPFAAPCLIWLQARRGGSLRANAGSRGVSL
SVSEISFARAVGMGPNARAIREALSRPLLVVKLESKQARRLADSVEGILEEGMQDWPGMDDAVRHRLALLLIGAWRLSGP
VMREAQPLPRTIMHRFLHAVELHMREHWTIARYAQEVGITAECLNATVRRVTGRSPLAIVHARLTQEAISLLDSSNLPIA
DIAETLGFHDPAYFSRFFKRQTGRSPNKHRQNSALRSHSGHSFAAWP
>Mature_287_residues
MNRWQRPPPDPEVQLLKGELAASEWTFSESGYRSFIFLSGSGSVRSGDGEVPFAAPCLIWLQARRGGSLRANAGSRGVSL
SVSEISFARAVGMGPNARAIREALSRPLLVVKLESKQARRLADSVEGILEEGMQDWPGMDDAVRHRLALLLIGAWRLSGP
VMREAQPLPRTIMHRFLHAVELHMREHWTIARYAQEVGITAECLNATVRRVTGRSPLAIVHARLTQEAISLLDSSNLPIA
DIAETLGFHDPAYFSRFFKRQTGRSPNKHRQNSALRSHSGHSFAAWP

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31830; Mature: 31830

Theoretical pI: Translated: 10.88; Mature: 10.88

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRWQRPPPDPEVQLLKGELAASEWTFSESGYRSFIFLSGSGSVRSGDGEVPFAAPCLIW
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
LQARRGGSLRANAGSRGVSLSVSEISFARAVGMGPNARAIREALSRPLLVVKLESKQARR
HHHCCCCCEECCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCHHHHH
LADSVEGILEEGMQDWPGMDDAVRHRLALLLIGAWRLSGPVMREAQPLPRTIMHRFLHAV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
ELHMREHWTIARYAQEVGITAECLNATVRRVTGRSPLAIVHARLTQEAISLLDSSNLPIA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
DIAETLGFHDPAYFSRFFKRQTGRSPNKHRQNSALRSHSGHSFAAWP
HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNRWQRPPPDPEVQLLKGELAASEWTFSESGYRSFIFLSGSGSVRSGDGEVPFAAPCLIW
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH
LQARRGGSLRANAGSRGVSLSVSEISFARAVGMGPNARAIREALSRPLLVVKLESKQARR
HHHCCCCCEECCCCCCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCHHHHH
LADSVEGILEEGMQDWPGMDDAVRHRLALLLIGAWRLSGPVMREAQPLPRTIMHRFLHAV
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHH
ELHMREHWTIARYAQEVGITAECLNATVRRVTGRSPLAIVHARLTQEAISLLDSSNLPIA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
DIAETLGFHDPAYFSRFFKRQTGRSPNKHRQNSALRSHSGHSFAAWP
HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA