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The map label for this gene is ytfH [H]

Identifier: 110634473

GI number: 110634473

Start: 2280026

End: 2280436

Strand: Direct

Name: ytfH [H]

Synonym: Meso_2124

Alternate gene names: 110634473

Gene position: 2280026-2280436 (Clockwise)

Preceding gene: 110634471

Following gene: 110634478

Centisome position: 51.67

GC content: 59.12

Gene sequence:

>411_bases
TTGAAACCTGGTCACCTACAGTCAACCATTGATGCCGATGCCGCGCCGGTTGTGGACAGGGAAAATTCGGATGCGTGCCG
GCCCATCAGCGAACTCTTGAGCCTTGTCGGCGATAAATGGACGATGCAGGTCGTGAAACACCTCGGCAACGGCACCATGC
GCTTTAACGAGCTGCGCCGCGCAATCGACGGCATCTCGCAGAAAATGCTGACGACCACGCTGCGCAACCTGGAGCGCGAG
GGCTTCGTCACCCGCACCATCTATCCGACGATCCCCCCGCGGGTGGATTATCGCTTGACCGATCTCGGCAATGAGCTGCT
GATCCCCATCCGGGCGCTTGCGGAATGGGTAAGCGAAAATCGCTATCGCATCCAGGAAGCTCGGACCCGCTTCGATCGCA
ATAACGGCTGA

Upstream 100 bases:

>100_bases
GCTTTGACACTATTCCGTCCTCGTTTCATGATTGGCTAGTATCGGAAGGATACTCACGCTATATTGGAAACCTGTGCCGG
TCGCACAAGGAGGCACTTTT

Downstream 100 bases:

>100_bases
TACGGGATCAGAACTCGGGCGGCACCGGTGTCGGCCGGCCGGTCCCGTCAAGCGCGACCATGACGAAGTCCGCCATGGTG
ACCAGGTCCATGACGTCGGA

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MKPGHLQSTIDADAAPVVDRENSDACRPISELLSLVGDKWTMQVVKHLGNGTMRFNELRRAIDGISQKMLTTTLRNLERE
GFVTRTIYPTIPPRVDYRLTDLGNELLIPIRALAEWVSENRYRIQEARTRFDRNNG

Sequences:

>Translated_136_residues
MKPGHLQSTIDADAAPVVDRENSDACRPISELLSLVGDKWTMQVVKHLGNGTMRFNELRRAIDGISQKMLTTTLRNLERE
GFVTRTIYPTIPPRVDYRLTDLGNELLIPIRALAEWVSENRYRIQEARTRFDRNNG
>Mature_136_residues
MKPGHLQSTIDADAAPVVDRENSDACRPISELLSLVGDKWTMQVVKHLGNGTMRFNELRRAIDGISQKMLTTTLRNLERE
GFVTRTIYPTIPPRVDYRLTDLGNELLIPIRALAEWVSENRYRIQEARTRFDRNNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=98, Percent_Identity=41.8367346938776, Blast_Score=89, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15594; Mature: 15594

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPGHLQSTIDADAAPVVDRENSDACRPISELLSLVGDKWTMQVVKHLGNGTMRFNELRR
CCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHH
AIDGISQKMLTTTLRNLEREGFVTRTIYPTIPPRVDYRLTDLGNELLIPIRALAEWVSEN
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEHHCCCCHHHHHHHHHHHHHHCC
RYRIQEARTRFDRNNG
HHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKPGHLQSTIDADAAPVVDRENSDACRPISELLSLVGDKWTMQVVKHLGNGTMRFNELRR
CCCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHH
AIDGISQKMLTTTLRNLEREGFVTRTIYPTIPPRVDYRLTDLGNELLIPIRALAEWVSEN
HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEHHCCCCHHHHHHHHHHHHHHCC
RYRIQEARTRFDRNNG
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]