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The map label for this gene is ydbM [H]

Identifier: 110634440

GI number: 110634440

Start: 2242897

End: 2244066

Strand: Reverse

Name: ydbM [H]

Synonym: Meso_2091

Alternate gene names: 110634440

Gene position: 2244066-2242897 (Counterclockwise)

Preceding gene: 110634447

Following gene: 110634439

Centisome position: 50.86

GC content: 64.7

Gene sequence:

>1170_bases
ATGTCCACTGCTTCAATAGATACAACCGGCGACGGCGCCGCGGCGGTCTCGATCGCGAGCCCGGTCGCCATAGCCCGGGA
GCTTTTGCCGACGCTCGCCGAACGGGCGGAGCGTTTCGACGAAACCGACAGCTTCGTCGCGGAGAATTACGCACTTTTAA
AGGAAGCCGGGCTGGTGGAGGCCGGCGTTCCCGCCGAGCTGGGCGGCGGCGGCGCCGATGTCGCGGAACTGGCCGAAATG
CTGCGCGTCATGGCGCATGCCTGCGGCTCGACCGCGCTCGCATTTTCCATGCACACTCATCAGGTTGCGATTCCGGCCTG
GCGGTGGCGTCATCAGCAGGTAGCGGCGGTGGAACCGCTATTGAAACGGGTCGCGACAGAACGGCTGATCCTGCTTTCCA
GCGGCGGGTCCGACTGGATCGGCGGTTCGGGAAAGGCCGTCAAGGCCGATGGCGGTTATCGGGTGACGGCGCGCAAGGTT
TTCACTTCGGGCGCGGAAGCGGGCGATATACTCATGACCGGAGCCGTCTATGAAGACGAGTACGGGGTGCAGTCCGTCAT
TCATTTCGGCGCTCCGATGAAGTCTTCCGAAGTGAGGGTGGTGAATACCTGGCGGACGCTCGGCATGCGCGGCACCGGCT
CACAGGACGTGGTGCTGGAGGAACTTTTCATCCCGGATGCGGGTGTCGCCTTCACGCGCAAGGCCGGGGAATGGCACCCG
GTTTTCCAGATCATCGCCACGATCGCCTTCCCCCTGATCTATGCCGCCTATCTGGGCGTGGCCGAAAGCGCCCGCGATAT
CGCGATCGATCTTGCGAAGCGCAAGGAGCCGAGGCCCTACACCCTCGATCTTGCGGGGCGGATGGATACGTCGCTCAGGG
CGGCACAGCTCGCGCATCGCTGGATGCTGGAGACGGTGGCGAAAAATGCACCGTCGGCGGAAAGCGTCAACGAGGTGATG
ATCGGGCGTTCGCTCGTCGCCGAACATGCCATCCGCACGGTCGAACTGGCGCTGGAGCTTTCCGGCGGGGCAGGCTTTTA
CCGGCGCAACGGGCTGGAGCGGCGGTTCAGGGATATCCAGGGCGCACGGTTCCACCCGCTGCAGACGGGACCGCAGGCGC
GCTATGCCGGCGCGATTGCGCTGGGCCAGCCGGTGACGCAGATCTACTGA

Upstream 100 bases:

>100_bases
GCAAAAGAAGCAGCGCTGGAATGGCTGCAGTACAGTTCGTGAACTAGACCGCCCCGTGGCGCTGCGCGATCCTCCAGGTC
TCAAAACCGGAGGAGTAACA

Downstream 100 bases:

>100_bases
ACGCGACGGAAAAGGGGCGGGGCGCTGCCGGTCGCAGCGCCCCGCATTCTATTGCCCGCCGACGAAACGTCCGACGAGTC
ATTAGTAAGCCCTTGTGCTA

Product: Acyl-CoA dehydrogenase, type 2-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MSTASIDTTGDGAAAVSIASPVAIARELLPTLAERAERFDETDSFVAENYALLKEAGLVEAGVPAELGGGGADVAELAEM
LRVMAHACGSTALAFSMHTHQVAIPAWRWRHQQVAAVEPLLKRVATERLILLSSGGSDWIGGSGKAVKADGGYRVTARKV
FTSGAEAGDILMTGAVYEDEYGVQSVIHFGAPMKSSEVRVVNTWRTLGMRGTGSQDVVLEELFIPDAGVAFTRKAGEWHP
VFQIIATIAFPLIYAAYLGVAESARDIAIDLAKRKEPRPYTLDLAGRMDTSLRAAQLAHRWMLETVAKNAPSAESVNEVM
IGRSLVAEHAIRTVELALELSGGAGFYRRNGLERRFRDIQGARFHPLQTGPQARYAGAIALGQPVTQIY

Sequences:

>Translated_389_residues
MSTASIDTTGDGAAAVSIASPVAIARELLPTLAERAERFDETDSFVAENYALLKEAGLVEAGVPAELGGGGADVAELAEM
LRVMAHACGSTALAFSMHTHQVAIPAWRWRHQQVAAVEPLLKRVATERLILLSSGGSDWIGGSGKAVKADGGYRVTARKV
FTSGAEAGDILMTGAVYEDEYGVQSVIHFGAPMKSSEVRVVNTWRTLGMRGTGSQDVVLEELFIPDAGVAFTRKAGEWHP
VFQIIATIAFPLIYAAYLGVAESARDIAIDLAKRKEPRPYTLDLAGRMDTSLRAAQLAHRWMLETVAKNAPSAESVNEVM
IGRSLVAEHAIRTVELALELSGGAGFYRRNGLERRFRDIQGARFHPLQTGPQARYAGAIALGQPVTQIY
>Mature_388_residues
STASIDTTGDGAAAVSIASPVAIARELLPTLAERAERFDETDSFVAENYALLKEAGLVEAGVPAELGGGGADVAELAEML
RVMAHACGSTALAFSMHTHQVAIPAWRWRHQQVAAVEPLLKRVATERLILLSSGGSDWIGGSGKAVKADGGYRVTARKVF
TSGAEAGDILMTGAVYEDEYGVQSVIHFGAPMKSSEVRVVNTWRTLGMRGTGSQDVVLEELFIPDAGVAFTRKAGEWHPV
FQIIATIAFPLIYAAYLGVAESARDIAIDLAKRKEPRPYTLDLAGRMDTSLRAAQLAHRWMLETVAKNAPSAESVNEVMI
GRSLVAEHAIRTVELALELSGGAGFYRRNGLERRFRDIQGARFHPLQTGPQARYAGAIALGQPVTQIY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 41715; Mature: 41584

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTASIDTTGDGAAAVSIASPVAIARELLPTLAERAERFDETDSFVAENYALLKEAGLVE
CCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
AGVPAELGGGGADVAELAEMLRVMAHACGSTALAFSMHTHQVAIPAWRWRHQQVAAVEPL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCHHHHHHHHHHHHHHH
LKRVATERLILLSSGGSDWIGGSGKAVKADGGYRVTARKVFTSGAEAGDILMTGAVYEDE
HHHHHHCEEEEEECCCCCCCCCCCCEEECCCCEEEEHHHHHHCCCCCCCEEEECEEECCC
YGVQSVIHFGAPMKSSEVRVVNTWRTLGMRGTGSQDVVLEELFIPDAGVAFTRKAGEWHP
CCHHHHHHHCCCCCCCCEEEEEEHHHHCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCHH
VFQIIATIAFPLIYAAYLGVAESARDIAIDLAKRKEPRPYTLDLAGRMDTSLRAAQLAHR
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
WMLETVAKNAPSAESVNEVMIGRSLVAEHAIRTVELALELSGGAGFYRRNGLERRFRDIQ
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHCCHHHHHHHCC
GARFHPLQTGPQARYAGAIALGQPVTQIY
CCEECCCCCCCCHHHCCEEECCCCHHHCC
>Mature Secondary Structure 
STASIDTTGDGAAAVSIASPVAIARELLPTLAERAERFDETDSFVAENYALLKEAGLVE
CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
AGVPAELGGGGADVAELAEMLRVMAHACGSTALAFSMHTHQVAIPAWRWRHQQVAAVEPL
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCHHHHHHHHHHHHHHH
LKRVATERLILLSSGGSDWIGGSGKAVKADGGYRVTARKVFTSGAEAGDILMTGAVYEDE
HHHHHHCEEEEEECCCCCCCCCCCCEEECCCCEEEEHHHHHHCCCCCCCEEEECEEECCC
YGVQSVIHFGAPMKSSEVRVVNTWRTLGMRGTGSQDVVLEELFIPDAGVAFTRKAGEWHP
CCHHHHHHHCCCCCCCCEEEEEEHHHHCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCHH
VFQIIATIAFPLIYAAYLGVAESARDIAIDLAKRKEPRPYTLDLAGRMDTSLRAAQLAHR
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH
WMLETVAKNAPSAESVNEVMIGRSLVAEHAIRTVELALELSGGAGFYRRNGLERRFRDIQ
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHCCHHHHHHHCC
GARFHPLQTGPQARYAGAIALGQPVTQIY
CCEECCCCCCCCHHHCCEEECCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]