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The map label for this gene is yffB [H]

Identifier: 110634404

GI number: 110634404

Start: 2204630

End: 2205139

Strand: Reverse

Name: yffB [H]

Synonym: Meso_2054

Alternate gene names: 110634404

Gene position: 2205139-2204630 (Counterclockwise)

Preceding gene: 110634405

Following gene: 110634403

Centisome position: 49.98

GC content: 63.33

Gene sequence:

>510_bases
ATGAAGCTGAGCGACGGCGTTGAGGCGGCGATTCACTGCGCGGTGGTGCTTGCGCAGCTGGAAGGGGAGGGTACGCTTCC
CGGCAGCGCGCTTGCCGAACTGTACGGGCTTTCACCGAGCTACCTGCTCAAGCATTTGCAAGCCCTGGCCGCGGCAAAGA
TCCTCGAATCCGTCCCTGGCCCGTATGGCGGCTATCGCCTCGCGAAAGCGCCGGAGCGAATTAGCCTGCTCGATATCGTC
CTTGCTGTCGAAGGGCCCAAACCGGCTTTTCGCTGCGCTGAGATAAGGCAGCGCGGACCGGGCGCTCTGGAGCCATCCGC
CTATGCGAAGCCGTGCGGCATCAATGCTGCCATGCTTCGGGCGGAACGCGCCTGGCGGGCTGTCTTGGCGGAAACGAAGC
TTTCCGAGATCGTCGACGGCTATAAGGCCGAGGCCGATCCGCGCGCGATCGCATTCAACTGCGGCTTTGTGGCCCGTCAC
CAGCGGCCGCAGGATAAAAAGCCCAAATAG

Upstream 100 bases:

>100_bases
ACTTCTGTCCAAAATAGCTTTTCGCCCCGGGGATGCGGTTTGCGCCTATTGCGGATCTAAAATATCCAGGATAAGTGATA
TCCATGATGGGTGGCGAGCC

Downstream 100 bases:

>100_bases
AAGGAAAGAATGCATGCAACCGCGTCTTAATTTTCATCAGGCTTCTCCGGAAATCATCAAAAATGTTCGCGCGCTGAACA
AGGCCGTCGACGAGTGCGGC

Product: BadM/Rrf2 family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MKLSDGVEAAIHCAVVLAQLEGEGTLPGSALAELYGLSPSYLLKHLQALAAAKILESVPGPYGGYRLAKAPERISLLDIV
LAVEGPKPAFRCAEIRQRGPGALEPSAYAKPCGINAAMLRAERAWRAVLAETKLSEIVDGYKAEADPRAIAFNCGFVARH
QRPQDKKPK

Sequences:

>Translated_169_residues
MKLSDGVEAAIHCAVVLAQLEGEGTLPGSALAELYGLSPSYLLKHLQALAAAKILESVPGPYGGYRLAKAPERISLLDIV
LAVEGPKPAFRCAEIRQRGPGALEPSAYAKPCGINAAMLRAERAWRAVLAETKLSEIVDGYKAEADPRAIAFNCGFVARH
QRPQDKKPK
>Mature_169_residues
MKLSDGVEAAIHCAVVLAQLEGEGTLPGSALAELYGLSPSYLLKHLQALAAAKILESVPGPYGGYRLAKAPERISLLDIV
LAVEGPKPAFRCAEIRQRGPGALEPSAYAKPCGINAAMLRAERAWRAVLAETKLSEIVDGYKAEADPRAIAFNCGFVARH
QRPQDKKPK

Specific function: Unknown

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 18044; Mature: 18044

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSDGVEAAIHCAVVLAQLEGEGTLPGSALAELYGLSPSYLLKHLQALAAAKILESVPG
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
PYGGYRLAKAPERISLLDIVLAVEGPKPAFRCAEIRQRGPGALEPSAYAKPCGINAAMLR
CCCCCCCCCCCCHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
AERAWRAVLAETKLSEIVDGYKAEADPRAIAFNCGFVARHQRPQDKKPK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKLSDGVEAAIHCAVVLAQLEGEGTLPGSALAELYGLSPSYLLKHLQALAAAKILESVPG
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
PYGGYRLAKAPERISLLDIVLAVEGPKPAFRCAEIRQRGPGALEPSAYAKPCGINAAMLR
CCCCCCCCCCCCHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
AERAWRAVLAETKLSEIVDGYKAEADPRAIAFNCGFVARHQRPQDKKPK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7773380; 11337471 [H]