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The map label for this gene is ycdC [C]

Identifier: 110634331

GI number: 110634331

Start: 2121562

End: 2122245

Strand: Direct

Name: ycdC [C]

Synonym: Meso_1981

Alternate gene names: 110634331

Gene position: 2121562-2122245 (Clockwise)

Preceding gene: 110634330

Following gene: 110634332

Centisome position: 48.08

GC content: 58.63

Gene sequence:

>684_bases
ATGATCAGAGAGAATTGCACCAGCATTTTCCCTCCGCGCGGACACGCTGCAAAGCGCCAGTCGATAATTGACGCCGCGGC
GACTGTTTTCTGCCGTGAGGGCTTTGCAGGTGCCAACATCGATCTGATAGCTGCGGAAGCTGGCGTTTCCCGTCAGACGA
TCTACAACCATCACGGCGACAAGGATAAGTTGTTCACGGCGGCATTGCGGGAGATCACCGACCGGATCAACACCCGCGCC
TTTGCGATTCTCGACACCTTTCCCAATCAGCCTGACGATCTCGAAGCGGATCTCGTGGCTTTCGCGCTGCGGCTAAACAA
GAACTGCATCTGGGGCCGGGAAGGAAAGCTTCTGCGCAAGATGCTTATCGCCGAAGGCGAGCGTTATCCCGAGCTGTTCG
ACGTGTGGCGCAAGGAAGGGCCGGGAAAGATCGAATCCTCGCTCGCGGCACGGCTTGCCCGTCTCGCGCATGCAGGCTAC
CTCGACATAGATGACCCGGATGTCGCCGCGCGGCAATTCATGGCACTTAACAATGCCGAATTGAACATGCCTTGCATGTT
CGGCAAATCCCTTACGGATGACGAGCTTCTCGCAGCGGCGCGGCGCGCAGTTTCCACTTTCCTTCGTGCCTTCGGGCGAA
AGGCTGACAGGCCGGTTCGCGCGACAGCCTCTCAGGAAGCCTAG

Upstream 100 bases:

>100_bases
TTTTCCAGTATTGGCAGCCCTGCGCGGAAAGAAGATCAGATAAGCCCTATCTCTTTTGGACAACCTTGTCTAATTCGTCA
ATCAGCTCTATATAGGAGCT

Downstream 100 bases:

>100_bases
CACACCCGGAAAGCCGGAACCGGTTCGCACGGGTACGCAGCTTTTCAAATTAGGCGTCTTTGTGCGTTCTCGAGGATGCT
CGGCCCCGAATGCTGCCGGC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; Transcription Regulator Protein; Transcriptional Regulator Protein; TetR Family Regulatory Protein; Transcriptional Regulator TetR

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MIRENCTSIFPPRGHAAKRQSIIDAAATVFCREGFAGANIDLIAAEAGVSRQTIYNHHGDKDKLFTAALREITDRINTRA
FAILDTFPNQPDDLEADLVAFALRLNKNCIWGREGKLLRKMLIAEGERYPELFDVWRKEGPGKIESSLAARLARLAHAGY
LDIDDPDVAARQFMALNNAELNMPCMFGKSLTDDELLAAARRAVSTFLRAFGRKADRPVRATASQEA

Sequences:

>Translated_227_residues
MIRENCTSIFPPRGHAAKRQSIIDAAATVFCREGFAGANIDLIAAEAGVSRQTIYNHHGDKDKLFTAALREITDRINTRA
FAILDTFPNQPDDLEADLVAFALRLNKNCIWGREGKLLRKMLIAEGERYPELFDVWRKEGPGKIESSLAARLARLAHAGY
LDIDDPDVAARQFMALNNAELNMPCMFGKSLTDDELLAAARRAVSTFLRAFGRKADRPVRATASQEA
>Mature_227_residues
MIRENCTSIFPPRGHAAKRQSIIDAAATVFCREGFAGANIDLIAAEAGVSRQTIYNHHGDKDKLFTAALREITDRINTRA
FAILDTFPNQPDDLEADLVAFALRLNKNCIWGREGKLLRKMLIAEGERYPELFDVWRKEGPGKIESSLAARLARLAHAGY
LDIDDPDVAARQFMALNNAELNMPCMFGKSLTDDELLAAARRAVSTFLRAFGRKADRPVRATASQEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25177; Mature: 25177

Theoretical pI: Translated: 7.97; Mature: 7.97

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRENCTSIFPPRGHAAKRQSIIDAAATVFCREGFAGANIDLIAAEAGVSRQTIYNHHGD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHCCCC
KDKLFTAALREITDRINTRAFAILDTFPNQPDDLEADLVAFALRLNKNCIWGREGKLLRK
HHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
MLIAEGERYPELFDVWRKEGPGKIESSLAARLARLAHAGYLDIDDPDVAARQFMALNNAE
HHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
LNMPCMFGKSLTDDELLAAARRAVSTFLRAFGRKADRPVRATASQEA
CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIRENCTSIFPPRGHAAKRQSIIDAAATVFCREGFAGANIDLIAAEAGVSRQTIYNHHGD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHCCCC
KDKLFTAALREITDRINTRAFAILDTFPNQPDDLEADLVAFALRLNKNCIWGREGKLLRK
HHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
MLIAEGERYPELFDVWRKEGPGKIESSLAARLARLAHAGYLDIDDPDVAARQFMALNNAE
HHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
LNMPCMFGKSLTDDELLAAARRAVSTFLRAFGRKADRPVRATASQEA
CCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA