Click here to switch to the map view.

The map label for this gene is 110634242

Identifier: 110634242

GI number: 110634242

Start: 2030117

End: 2030458

Strand: Reverse

Name: 110634242

Synonym: Meso_1892

Alternate gene names: NA

Gene position: 2030458-2030117 (Counterclockwise)

Preceding gene: 110634243

Following gene: 110634241

Centisome position: 46.02

GC content: 59.36

Gene sequence:

>342_bases
ATGCCTATGCGTGCTCCATCCCTTCGCGCTTGCGGTTGCGTCGTCGCTCCCGGTCAGCGTTGCAAGCACATGATCGATGC
CGACCGCGAACGTAAAGCCCGTCACGACCAGCAACGCCCCACCGCACGCCAGCGCGGCTATGATAGCAAGTGGGAAAAGG
CGCGGGCAGAATACCTTGCAGCCAATCCACGTTGTTTCATGTGCGGCCAACCTTCCCGCGTCGTGGATCACAAGACCCCG
CATAAGGGCAATCGCAAGCTCTTCTGGCAGCGATCGAACTGGCAATCCCTCTGCACGCCCTGTCATAGCTCGAAAAAGCA
AAGCATGGAGGCGAGGCAATGA

Upstream 100 bases:

>100_bases
CCCAAACCAGAAACCAAAGCCTTTACCGACGACAATGTGAAGTCTGCTTTCCGCGCGTTGGGCACTGTCATCCAGACGGC
GGCGGGAAAGGCGGAATGAG

Downstream 100 bases:

>100_bases
CTCCCGCCGAACGCGCCCGCAAAATCGAACAGGAAGAGTTCGCAGCGGAGTGCAGAGCTGCCCGCGCCCGCGCGCTCGCC
TATTCCAAGGAATGCCGACA

Product: HNH endonuclease

Products: NA

Alternate protein names: Restriction Endonuclease; HNH Nuclease Family Protein; Phage Holin Protein; Phage Associated Protein; Prophage; Prophage LambdaSo Holin; Restriction Endonuclease Protein; Phage Protein; Phage Endonuclease; Phage Holin; HNH Nuclease

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MPMRAPSLRACGCVVAPGQRCKHMIDADRERKARHDQQRPTARQRGYDSKWEKARAEYLAANPRCFMCGQPSRVVDHKTP
HKGNRKLFWQRSNWQSLCTPCHSSKKQSMEARQ

Sequences:

>Translated_113_residues
MPMRAPSLRACGCVVAPGQRCKHMIDADRERKARHDQQRPTARQRGYDSKWEKARAEYLAANPRCFMCGQPSRVVDHKTP
HKGNRKLFWQRSNWQSLCTPCHSSKKQSMEARQ
>Mature_112_residues
PMRAPSLRACGCVVAPGQRCKHMIDADRERKARHDQQRPTARQRGYDSKWEKARAEYLAANPRCFMCGQPSRVVDHKTPH
KGNRKLFWQRSNWQSLCTPCHSSKKQSMEARQ

Specific function: Unknown

COG id: COG1403

COG function: function code V; Restriction endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13151; Mature: 13020

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
10.6 %Cys+Met (Translated Protein)
6.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
9.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMRAPSLRACGCVVAPGQRCKHMIDADRERKARHDQQRPTARQRGYDSKWEKARAEYLA
CCCCCCCCCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHC
ANPRCFMCGQPSRVVDHKTPHKGNRKLFWQRSNWQSLCTPCHSSKKQSMEARQ
CCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure 
PMRAPSLRACGCVVAPGQRCKHMIDADRERKARHDQQRPTARQRGYDSKWEKARAEYLA
CCCCCCCCCCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHC
ANPRCFMCGQPSRVVDHKTPHKGNRKLFWQRSNWQSLCTPCHSSKKQSMEARQ
CCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA