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The map label for this gene is scpA [H]

Identifier: 110634160

GI number: 110634160

Start: 1938315

End: 1939115

Strand: Reverse

Name: scpA [H]

Synonym: Meso_1809

Alternate gene names: 110634160

Gene position: 1939115-1938315 (Counterclockwise)

Preceding gene: 110634161

Following gene: 110634159

Centisome position: 43.95

GC content: 63.3

Gene sequence:

>801_bases
ATGGACAAGCTGTGGGCCGAGGAGACAGCCGGACACGGCGTCTCCGAGCCGGTGCTTGCTGTCGATGTGGAAGGTTTCGA
AGGTCCGCTCGACCTGCTGCTTCACCTCGCGCGCAACCAGAAGGTCGATCTCGCCCGCATTTCCGTCCTCGCGCTTGCCG
AGCAATATCTGCGGTTCATCGACCAGGTGCGCCAGATGCGGCTGGAGCTTGCTGCCGACTATCTCGTGATGGCGGCCTGG
CTTGCCTATCTCAAATCGCGGCTCCTGATCCCGAAGCAGCGTACCGATGGCGAACCCACCGGTGAGGAAATGGCAGCTCT
CCTGCAATTCCGCTTGAAGCGGCTGGAGGCGATCCGGGATGCCGCTGCGCGGCTCGTAAACCGGAACAGGCTCGGGCGAG
ACGTTTTCGCGCGCGGCATGCCGGAGCATGTCGTGGTGGAGAAGAAAAACGCCTATACCGCGACCCTCTACGATCTGCTC
ACCGCCTATGCGGGCCAAAGGCAGCGGCGCGCAATAACCAATGTGCAGATTGCCAAGAGGGGGGTCTGGTCACTCAAGCA
GGCGCGAGAGGTTCTCACCCGCCTTATGGGGGACCTTCCGGACTGGACGGCGCTCGACCGCTTTCTCATCCGGTATCTCA
CCGGGCCGGAGGAGCGGGCAACGGCCATCGCCAGCACCTTTGCCGCCTCGCTGGAGCTGGTCCGCGAGGGAGCGCTGGAA
ATCAGGCAGCAGGAGCCCTTCGCGCCGATTTACATGCGGCGCGGCACGAAAGGCCTTGAGCAGACTGAGGCAGCTTCATG
A

Upstream 100 bases:

>100_bases
ATTCAATTCGTATTTCGAAGCGATTGCCTGAAAGGCGAGACAAGGAACCAGTTTGGCGGACCAGGGACAAGCGACGGCAA
AGACGGGAAAGCCCATCCCC

Downstream 100 bases:

>100_bases
CCGAATCTTCCAATGTCATTCCGTTCGCCGAGGAGGACGAGCAGGCGCCTTCGCCTGAAGGCGTCGGACCTTCGAGCGTG
GCCTTTGCCGAGGCGAAGCG

Product: condensin subunit ScpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MDKLWAEETAGHGVSEPVLAVDVEGFEGPLDLLLHLARNQKVDLARISVLALAEQYLRFIDQVRQMRLELAADYLVMAAW
LAYLKSRLLIPKQRTDGEPTGEEMAALLQFRLKRLEAIRDAAARLVNRNRLGRDVFARGMPEHVVVEKKNAYTATLYDLL
TAYAGQRQRRAITNVQIAKRGVWSLKQAREVLTRLMGDLPDWTALDRFLIRYLTGPEERATAIASTFAASLELVREGALE
IRQQEPFAPIYMRRGTKGLEQTEAAS

Sequences:

>Translated_266_residues
MDKLWAEETAGHGVSEPVLAVDVEGFEGPLDLLLHLARNQKVDLARISVLALAEQYLRFIDQVRQMRLELAADYLVMAAW
LAYLKSRLLIPKQRTDGEPTGEEMAALLQFRLKRLEAIRDAAARLVNRNRLGRDVFARGMPEHVVVEKKNAYTATLYDLL
TAYAGQRQRRAITNVQIAKRGVWSLKQAREVLTRLMGDLPDWTALDRFLIRYLTGPEERATAIASTFAASLELVREGALE
IRQQEPFAPIYMRRGTKGLEQTEAAS
>Mature_266_residues
MDKLWAEETAGHGVSEPVLAVDVEGFEGPLDLLLHLARNQKVDLARISVLALAEQYLRFIDQVRQMRLELAADYLVMAAW
LAYLKSRLLIPKQRTDGEPTGEEMAALLQFRLKRLEAIRDAAARLVNRNRLGRDVFARGMPEHVVVEKKNAYTATLYDLL
TAYAGQRQRRAITNVQIAKRGVWSLKQAREVLTRLMGDLPDWTALDRFLIRYLTGPEERATAIASTFAASLELVREGALE
IRQQEPFAPIYMRRGTKGLEQTEAAS

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpB that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1354

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003768 [H]

Pfam domain/function: PF02616 ScpA_ScpB [H]

EC number: NA

Molecular weight: Translated: 30087; Mature: 30087

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLWAEETAGHGVSEPVLAVDVEGFEGPLDLLLHLARNQKVDLARISVLALAEQYLRFI
CCCCHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
DQVRQMRLELAADYLVMAAWLAYLKSRLLIPKQRTDGEPTGEEMAALLQFRLKRLEAIRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AAARLVNRNRLGRDVFARGMPEHVVVEKKNAYTATLYDLLTAYAGQRQRRAITNVQIAKR
HHHHHHHHHHCCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
GVWSLKQAREVLTRLMGDLPDWTALDRFLIRYLTGPEERATAIASTFAASLELVREGALE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IRQQEPFAPIYMRRGTKGLEQTEAAS
HHHCCCCCHHHHHCCCCCCCHHCCCC
>Mature Secondary Structure
MDKLWAEETAGHGVSEPVLAVDVEGFEGPLDLLLHLARNQKVDLARISVLALAEQYLRFI
CCCCHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
DQVRQMRLELAADYLVMAAWLAYLKSRLLIPKQRTDGEPTGEEMAALLQFRLKRLEAIRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AAARLVNRNRLGRDVFARGMPEHVVVEKKNAYTATLYDLLTAYAGQRQRRAITNVQIAKR
HHHHHHHHHHCCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
GVWSLKQAREVLTRLMGDLPDWTALDRFLIRYLTGPEERATAIASTFAASLELVREGALE
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IRQQEPFAPIYMRRGTKGLEQTEAAS
HHHCCCCCHHHHHCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]