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The map label for this gene is scpB [H]

Identifier: 110634159

GI number: 110634159

Start: 1937584

End: 1938318

Strand: Reverse

Name: scpB [H]

Synonym: Meso_1808

Alternate gene names: 110634159

Gene position: 1938318-1937584 (Counterclockwise)

Preceding gene: 110634160

Following gene: 110634158

Centisome position: 43.93

GC content: 63.4

Gene sequence:

>735_bases
ATGACCGAATCTTCCAATGTCATTCCGTTCGCCGAGGAGGACGAGCAGGCGCCTTCGCCTGAAGGCGTCGGACCTTCGAG
CGTGGCCTTTGCCGAGGCGAAGCGAATGGCCGAGGCCCTGGTCTTCGCCAGCGCGGCTCCGGTTTCATTCAAAAGCCTTT
CGGATCGGCTGCCCGACGGGGTGGACATTCGCGCCATCATGGAAGAGCTGAAGGGGGATTACGAAAGACGCGGCGTCAAT
CTCGTCCGGGTGGAGGATTCGTGGGCATTCCGGACGGCGGGCGATCTTGCGTTCCTGATGAGCCGCGACGCGGTGCAGCA
GAAGAAGCTTTCGCGCGCCGCGCTGGAGATGCTTTCCGTGATCGCCTACCATCAGCCGGTAACACGCGCGGAGATCGAGG
AGATCCGCGGCGTGGAGACCTCCAAGGGCACGCTCGACCTCTTGCTCGAGACCGGCTGGGTTAGGATGCGAGGCCGCCGG
CGCGCGCCGGGGAGGCCGGTAACCTATGGAACGACTCTCGAATTCCTCGATCATTTCGGGCTCGAGGAGTTGCGCGACCT
ACCCGGTATCGAAGAACTCAAGGGAGCAGGCCTCCTCTCCTCGCGCATGCCGGCCAATTTCTCCGTGCCCCAGCCGCCCT
CGGACCCGGACATGCTGAGCGAGGACGAGGACCCGCTGACGGATATCGATCTTGAAGAACTCGGCCTGTTGACACCGCGC
GTCGAGGGTGATTGA

Upstream 100 bases:

>100_bases
TGGTCCGCGAGGGAGCGCTGGAAATCAGGCAGCAGGAGCCCTTCGCGCCGATTTACATGCGGCGCGGCACGAAAGGCCTT
GAGCAGACTGAGGCAGCTTC

Downstream 100 bases:

>100_bases
CCGCTGGCCATGAGCCTGGCACCAACGGAAGCGGGAACGCGGCCAGAATGAGCGAAGCCCTGGAAAAGCCAGCGCGGGTT
ACCGCAGGCGTCACTTTTGC

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTESSNVIPFAEEDEQAPSPEGVGPSSVAFAEAKRMAEALVFASAAPVSFKSLSDRLPDGVDIRAIMEELKGDYERRGVN
LVRVEDSWAFRTAGDLAFLMSRDAVQQKKLSRAALEMLSVIAYHQPVTRAEIEEIRGVETSKGTLDLLLETGWVRMRGRR
RAPGRPVTYGTTLEFLDHFGLEELRDLPGIEELKGAGLLSSRMPANFSVPQPPSDPDMLSEDEDPLTDIDLEELGLLTPR
VEGD

Sequences:

>Translated_244_residues
MTESSNVIPFAEEDEQAPSPEGVGPSSVAFAEAKRMAEALVFASAAPVSFKSLSDRLPDGVDIRAIMEELKGDYERRGVN
LVRVEDSWAFRTAGDLAFLMSRDAVQQKKLSRAALEMLSVIAYHQPVTRAEIEEIRGVETSKGTLDLLLETGWVRMRGRR
RAPGRPVTYGTTLEFLDHFGLEELRDLPGIEELKGAGLLSSRMPANFSVPQPPSDPDMLSEDEDPLTDIDLEELGLLTPR
VEGD
>Mature_243_residues
TESSNVIPFAEEDEQAPSPEGVGPSSVAFAEAKRMAEALVFASAAPVSFKSLSDRLPDGVDIRAIMEELKGDYERRGVNL
VRVEDSWAFRTAGDLAFLMSRDAVQQKKLSRAALEMLSVIAYHQPVTRAEIEEIRGVETSKGTLDLLLETGWVRMRGRRR
APGRPVTYGTTLEFLDHFGLEELRDLPGIEELKGAGLLSSRMPANFSVPQPPSDPDMLSEDEDPLTDIDLEELGLLTPRV
EGD

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 26858; Mature: 26726

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESSNVIPFAEEDEQAPSPEGVGPSSVAFAEAKRMAEALVFASAAPVSFKSLSDRLPDG
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
VDIRAIMEELKGDYERRGVNLVRVEDSWAFRTAGDLAFLMSRDAVQQKKLSRAALEMLSV
CCHHHHHHHHHCHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IAYHQPVTRAEIEEIRGVETSKGTLDLLLETGWVRMRGRRRAPGRPVTYGTTLEFLDHFG
HHHCCCCHHHHHHHHCCCCCCCCCEEHHHHCCHHEECCCCCCCCCCCCCCHHHHHHHHCC
LEELRDLPGIEELKGAGLLSSRMPANFSVPQPPSDPDMLSEDEDPLTDIDLEELGLLTPR
HHHHHHCCCHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
VEGD
CCCC
>Mature Secondary Structure 
TESSNVIPFAEEDEQAPSPEGVGPSSVAFAEAKRMAEALVFASAAPVSFKSLSDRLPDG
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
VDIRAIMEELKGDYERRGVNLVRVEDSWAFRTAGDLAFLMSRDAVQQKKLSRAALEMLSV
CCHHHHHHHHHCHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IAYHQPVTRAEIEEIRGVETSKGTLDLLLETGWVRMRGRRRAPGRPVTYGTTLEFLDHFG
HHHCCCCHHHHHHHHCCCCCCCCCEEHHHHCCHHEECCCCCCCCCCCCCCHHHHHHHHCC
LEELRDLPGIEELKGAGLLSSRMPANFSVPQPPSDPDMLSEDEDPLTDIDLEELGLLTPR
HHHHHHCCCHHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
VEGD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA