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The map label for this gene is cspD [C]

Identifier: 110634084

GI number: 110634084

Start: 1853134

End: 1853727

Strand: Reverse

Name: cspD [C]

Synonym: Meso_1733

Alternate gene names: 110634084

Gene position: 1853727-1853134 (Counterclockwise)

Preceding gene: 110634087

Following gene: 110634083

Centisome position: 42.01

GC content: 60.1

Gene sequence:

>594_bases
ATGGAGGATAAATCCTCGACCGATCGAGGGCTTGCAGAGAACGAAGCCCGGGGGGCGGGCAATAGTGAAAATGTGTCCGA
TGCAATCGAGGTTGCCGGCGCAATAAAATGGTTCGATGTGGCCAAAGGATTTGGCTTCATCCTTCCCGACATCGCCGAGT
TCGGCGACGTTCTCCTGCATGTGTCCTGTCTTCGGCGTGACGGATTCCAAACCGCGTTGAGCGGCGCCCGCGTCGTCTGC
CTGGCCAAACGGGGCGACAAGGGGATGCAAGCCTTCAGGGTCGTCTCGATGGATATGTCAACCGCGGTTCATCCCGCGGA
GGATCAGGCGCCGCGCACGCGCATCACCGTGGCCCCGGAAAGCGGGCTGGAAAGGGCGCTGGTAAAATGGTTCAACCGGA
CAAAGGGCTTCGGCTTCCTCACGCGCGGGGAAGGGACGGAGGATATCTTTGTGCATATGGAGACGCTGCGCCGGTTCGGC
GTGACGGAGCTAAGACCTGGGCAGGTCGTGCTGGTGCGGTTCGGGCGAGGCGATAAGGGCCTTATGGCTGCCGAAATTCA
TCCTGATATTGGCACTTTGCCGGTTTCCCACTGA

Upstream 100 bases:

>100_bases
GCTGTTGAAAATCCCGAGCGGGCCTTGCTAAGTCGTGAGAGGGGGATGCAATCTTGATGAGGACAGAATCAATCCACCGG
ACTTGGGAAGGCAAGACGAA

Downstream 100 bases:

>100_bases
CGTCCCGGGCAGGCGAAGCGCCCAGAGGAAAACCCGATGCGTCTCTTCCTGCTGATCCTGCTCCTTTTTCCCTTAGGCCT
GACTTTCAGTTCGAACGCCC

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: Transcriptional Regulator Cold Shock Protein; Cold Shock-Like Protein CspA; Cold Shock-Like Protein CspE; Cold Shock Protein CspA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MEDKSSTDRGLAENEARGAGNSENVSDAIEVAGAIKWFDVAKGFGFILPDIAEFGDVLLHVSCLRRDGFQTALSGARVVC
LAKRGDKGMQAFRVVSMDMSTAVHPAEDQAPRTRITVAPESGLERALVKWFNRTKGFGFLTRGEGTEDIFVHMETLRRFG
VTELRPGQVVLVRFGRGDKGLMAAEIHPDIGTLPVSH

Sequences:

>Translated_197_residues
MEDKSSTDRGLAENEARGAGNSENVSDAIEVAGAIKWFDVAKGFGFILPDIAEFGDVLLHVSCLRRDGFQTALSGARVVC
LAKRGDKGMQAFRVVSMDMSTAVHPAEDQAPRTRITVAPESGLERALVKWFNRTKGFGFLTRGEGTEDIFVHMETLRRFG
VTELRPGQVVLVRFGRGDKGLMAAEIHPDIGTLPVSH
>Mature_197_residues
MEDKSSTDRGLAENEARGAGNSENVSDAIEVAGAIKWFDVAKGFGFILPDIAEFGDVLLHVSCLRRDGFQTALSGARVVC
LAKRGDKGMQAFRVVSMDMSTAVHPAEDQAPRTRITVAPESGLERALVKWFNRTKGFGFLTRGEGTEDIFVHMETLRRFG
VTELRPGQVVLVRFGRGDKGLMAAEIHPDIGTLPVSH

Specific function: Inhibits DNA Replication At Both Initiation And Elongation Steps, Most Probably By Binding To The Opened, Single- Stranded Regions At Replication Forks. Plays A Regulatory Role In Chromosomal Replication In Nutrient-Depleted Cells. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21445; Mature: 21445

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDKSSTDRGLAENEARGAGNSENVSDAIEVAGAIKWFDVAKGFGFILPDIAEFGDVLLH
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
VSCLRRDGFQTALSGARVVCLAKRGDKGMQAFRVVSMDMSTAVHPAEDQAPRTRITVAPE
HHHHHCCCHHHHHCCCEEEEEECCCCCCHHHHHHEEEHHHHCCCCCCCCCCCEEEEECCC
SGLERALVKWFNRTKGFGFLTRGEGTEDIFVHMETLRRFGVTELRPGQVVLVRFGRGDKG
CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
LMAAEIHPDIGTLPVSH
EEEEEECCCCCCCCCCC
>Mature Secondary Structure
MEDKSSTDRGLAENEARGAGNSENVSDAIEVAGAIKWFDVAKGFGFILPDIAEFGDVLLH
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
VSCLRRDGFQTALSGARVVCLAKRGDKGMQAFRVVSMDMSTAVHPAEDQAPRTRITVAPE
HHHHHCCCHHHHHCCCEEEEEECCCCCCHHHHHHEEEHHHHCCCCCCCCCCCEEEEECCC
SGLERALVKWFNRTKGFGFLTRGEGTEDIFVHMETLRRFGVTELRPGQVVLVRFGRGDKG
CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
LMAAEIHPDIGTLPVSH
EEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA