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The map label for this gene is rbsC [H]

Identifier: 110633958

GI number: 110633958

Start: 1729245

End: 1730261

Strand: Direct

Name: rbsC [H]

Synonym: Meso_1606

Alternate gene names: 110633958

Gene position: 1729245-1730261 (Clockwise)

Preceding gene: 110633957

Following gene: 110633959

Centisome position: 39.19

GC content: 61.75

Gene sequence:

>1017_bases
ATGTTACATGTAGCCGAATCTGGCGCCACCACGCCGGCCGCCTCCTGGTTTTCGGGCGCGCGGCTGTGGCGCCTGGCAAA
TGCAGGCGGGCTGCTCATACTGATCATTGCGCTGATTGCCGGCATCGGCATCTTTATTCCGAGCTTTCTGTCGCCGTTCA
ATCTTTTCGCACTCACCCGCAATCTCGCTGTCGACATCATCATTGGCTTTTCCATGATGACGGTTCTCGGCCTCGGTCAC
ATGAATCTTGCGGTAGGCGCGATAGGCGCCTGCGCCGCAATGGTGACAGGCTTCGCGCTGGAGCGCGTCGGCCTGCCCAT
ACCGCTGGCGATCATCGTGGCGCTGCTGACTGGCATGGTGCTGGGCGCAATCAACGGTATCCTGATCGTCCGCACCGGCC
TGCACAGCTTCGTCATCACCCTCGCCACGGCGAGCCTCTATTTCGGGTTGATGTTCATTCTCACCAAGGCCGAGGCATTC
CGAAACCTGCCTGTGGATTTCTCAGGCTTGGCGAAGGGGCGCATCGGCTCCTTCTCGAACTTCCTTTTCGTGGCCTTGGC
GCTGGCGATTGGCCTGGTGGCGCTGTTCAACTATTCGCAACTGGGACGGCAGATGCTCGCCACCGGAGCTAACAGCGTGG
CGGCGGGCCTTTCAGGTGTGCCCGTCAACCGAATTGTCGTGATAACGCACGCTCTGTCAGGCCTGCTGGCCGCGATCGCG
GGCGTGCTTGTCACGGCGCGGCTGGCTTCGGCCTTGCCCTCGATCGGTGAGGACTGGCTGCTGCCGTCATTTCTTGCCCC
GCTGCTGGGCGGGACTCTCCTGGCGGGGGGCTATGTCTCGGTTGTCGGCGCCGTCCTCGGCGCAATTCTTCTGTCAGTGC
TGCAGAACGGCCTGATCCTGATGAATGTCAGCGGTTTCTGGATCCAGTTTTTCCTCGGCCTCGCCCTGCTGGCAGCGGTC
GGCATCGATCGTTGGCGCAGCGTCACCGCCGAACGCAGAGGAATGGTCAGTCGATGA

Upstream 100 bases:

>100_bases
ACGCCAAATACCTCGCCTGCAGCTGACGCTCCGATAGTCTGCGCCTGGCGGCCTCGTGCCGCCACACGCGCCGCGCGACA
AATCGAACGAGTTATTGCCG

Downstream 100 bases:

>100_bases
AACAGTCGCTCGGCGATCGCATCCTGAATATCGAGTGGCTGCCGCTCCTCGTCCTGGCATTTGTCGGCATCCTCGTGCTG
TCGATGATATCGAGCAATTT

Product: inner-membrane translocator

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MLHVAESGATTPAASWFSGARLWRLANAGGLLILIIALIAGIGIFIPSFLSPFNLFALTRNLAVDIIIGFSMMTVLGLGH
MNLAVGAIGACAAMVTGFALERVGLPIPLAIIVALLTGMVLGAINGILIVRTGLHSFVITLATASLYFGLMFILTKAEAF
RNLPVDFSGLAKGRIGSFSNFLFVALALAIGLVALFNYSQLGRQMLATGANSVAAGLSGVPVNRIVVITHALSGLLAAIA
GVLVTARLASALPSIGEDWLLPSFLAPLLGGTLLAGGYVSVVGAVLGAILLSVLQNGLILMNVSGFWIQFFLGLALLAAV
GIDRWRSVTAERRGMVSR

Sequences:

>Translated_338_residues
MLHVAESGATTPAASWFSGARLWRLANAGGLLILIIALIAGIGIFIPSFLSPFNLFALTRNLAVDIIIGFSMMTVLGLGH
MNLAVGAIGACAAMVTGFALERVGLPIPLAIIVALLTGMVLGAINGILIVRTGLHSFVITLATASLYFGLMFILTKAEAF
RNLPVDFSGLAKGRIGSFSNFLFVALALAIGLVALFNYSQLGRQMLATGANSVAAGLSGVPVNRIVVITHALSGLLAAIA
GVLVTARLASALPSIGEDWLLPSFLAPLLGGTLLAGGYVSVVGAVLGAILLSVLQNGLILMNVSGFWIQFFLGLALLAAV
GIDRWRSVTAERRGMVSR
>Mature_338_residues
MLHVAESGATTPAASWFSGARLWRLANAGGLLILIIALIAGIGIFIPSFLSPFNLFALTRNLAVDIIIGFSMMTVLGLGH
MNLAVGAIGACAAMVTGFALERVGLPIPLAIIVALLTGMVLGAINGILIVRTGLHSFVITLATASLYFGLMFILTKAEAF
RNLPVDFSGLAKGRIGSFSNFLFVALALAIGLVALFNYSQLGRQMLATGANSVAAGLSGVPVNRIVVITHALSGLLAAIA
GVLVTARLASALPSIGEDWLLPSFLAPLLGGTLLAGGYVSVVGAVLGAILLSVLQNGLILMNVSGFWIQFFLGLALLAAV
GIDRWRSVTAERRGMVSR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=334, Percent_Identity=31.437125748503, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1790191, Length=326, Percent_Identity=29.7546012269939, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1790524, Length=328, Percent_Identity=29.2682926829268, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788896, Length=316, Percent_Identity=30.379746835443, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789992, Length=134, Percent_Identity=41.7910447761194, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787793, Length=262, Percent_Identity=29.3893129770992, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787794, Length=318, Percent_Identity=30.188679245283, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788471, Length=319, Percent_Identity=29.7805642633229, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87082395, Length=314, Percent_Identity=27.0700636942675, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34951; Mature: 34951

Theoretical pI: Translated: 11.52; Mature: 11.52

Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHVAESGATTPAASWFSGARLWRLANAGGLLILIIALIAGIGIFIPSFLSPFNLFALTR
CCEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
NLAVDIIIGFSMMTVLGLGHMNLAVGAIGACAAMVTGFALERVGLPIPLAIIVALLTGMV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LGAINGILIVRTGLHSFVITLATASLYFGLMFILTKAEAFRNLPVDFSGLAKGRIGSFSN
HHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHH
FLFVALALAIGLVALFNYSQLGRQMLATGANSVAAGLSGVPVNRIVVITHALSGLLAAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
GVLVTARLASALPSIGEDWLLPSFLAPLLGGTLLAGGYVSVVGAVLGAILLSVLQNGLIL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHCCEEE
MNVSGFWIQFFLGLALLAAVGIDRWRSVTAERRGMVSR
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLHVAESGATTPAASWFSGARLWRLANAGGLLILIIALIAGIGIFIPSFLSPFNLFALTR
CCEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
NLAVDIIIGFSMMTVLGLGHMNLAVGAIGACAAMVTGFALERVGLPIPLAIIVALLTGMV
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
LGAINGILIVRTGLHSFVITLATASLYFGLMFILTKAEAFRNLPVDFSGLAKGRIGSFSN
HHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCHHH
FLFVALALAIGLVALFNYSQLGRQMLATGANSVAAGLSGVPVNRIVVITHALSGLLAAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
GVLVTARLASALPSIGEDWLLPSFLAPLLGGTLLAGGYVSVVGAVLGAILLSVLQNGLIL
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHCCEEE
MNVSGFWIQFFLGLALLAAVGIDRWRSVTAERRGMVSR
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]