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The map label for this gene is rlpA [H]

Identifier: 110633931

GI number: 110633931

Start: 1699344

End: 1700570

Strand: Direct

Name: rlpA [H]

Synonym: Meso_1579

Alternate gene names: 110633931

Gene position: 1699344-1700570 (Clockwise)

Preceding gene: 110633929

Following gene: 110633932

Centisome position: 38.51

GC content: 60.72

Gene sequence:

>1227_bases
GTGTTTTTTTCGGGGAAGGACCAGGTGATCGCTGGGCGGAATTTGAGGGGAAAACGGGTCAACACCGGTCTGGCCTGTGT
CGGCATCGTCGCTCTATCGGTGTTCTTGGCCGGCTGCGGCAGTGCTGTTGAGAAGGTTTCCCTCAAAAGCTCGAAGGAGT
ACTTCCCCGAATCGAAATACGGCGTGAAGGCAAGCCCTCGCGTAGCCTATGGCGCCTCCAAGTTGCCGCGCGGCGGTGGC
CGTTATCAGGTAGGCAAGCCCTATCAGGTGAAGGGGCGCTGGTATCGTCCGAAGGAAGATCCTGACTACAGGGCCGAAGG
TGCGGCATCCTGGTATGGCGACGCGTTCCACGGCAGGCTCACTGCCAACGGCGAAATCTATGACATGACCCATTTGACGG
CAGCTCATCCCACGATGCCGCTGCCCAGCTATGCGCGCGTCACCAATATGGATAACGGCAGTTCCGTTATCGTCCGTGTG
AACGATCGAGGCCCTTTCGCAAAGGGACGCGTCATCGATCTTTCGAAACGCGCCGCTGAATTGCTTGATTACACGCATTC
GGGCGTCGCTCGCGTGCAGGTGGAATATGTTGGGCCGGCGCCTCTGGAGGGCCGCGACGATTCTTTCCTTCTTGCCTCCT
ACCGTCCCGGCGGCGCTGCGCCTGATCCGTCGGACGGTTTGCCAACCGGCGTGATGGTGGCGATGGCCGGACCAACGCCA
ACACAACCCGCGCCGGCAGCAACGCTGGCCTTCGCAAACCAGCCAGGACTGGTAGAGACCGGTGGTACCGTCGCGCTGCC
AGCCATTGGTCCGATCGTGCCGGATAGGCCCGCCGCTTCTCCTGTTCCTGCAGAGCAAGTCGATCTCGCACTTCTCTCCT
ATGCCAACCAACGGGTGAATTCTGCCACGCAAGTCTTTGACTCAGTTTTGAAATCAGATCTTGACGAGAAGCTGATCGTA
AGCTGGTGGGCGGACCGTGGCGGGAACGCCGGTCAAGCGATCCATGCCCCCTATATCAATATCGGCACGTGGAACTCGCG
CGAGGAAGCAGGGCAGGTCACGCGCTCGCTTTCCAAACTCGGGCGGCTACTGATGGAGGAGAAGGCAGGCCCCGAGGGTC
GCGTCTATGTCCTCTCACTGGTGCCGGACGGTCGCGCTGAGATGGATGAGATGCTGCAGGCCGCCTGGGCGGCGGGAGCA
ACGGACGCATTCGCCATACGCGATTGA

Upstream 100 bases:

>100_bases
TTTACTGCCATAGTTGATTCAGAAGGTTATAACGATTTCGTGCGCATGAGAGGGATCCGGCAACGCGGGTCATGCGCAGT
CTGAGGGGCGTCTTTTGAAA

Downstream 100 bases:

>100_bases
GCTTTGCCAGTTTAGTTTTGCCATATTGCGCCGGGCGGGCTTGAATAGCCGGCCCGGCGTCTAGATTCTAGCGCAGAACA
GGCAGGAGGGGATTACCTTG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MFFSGKDQVIAGRNLRGKRVNTGLACVGIVALSVFLAGCGSAVEKVSLKSSKEYFPESKYGVKASPRVAYGASKLPRGGG
RYQVGKPYQVKGRWYRPKEDPDYRAEGAASWYGDAFHGRLTANGEIYDMTHLTAAHPTMPLPSYARVTNMDNGSSVIVRV
NDRGPFAKGRVIDLSKRAAELLDYTHSGVARVQVEYVGPAPLEGRDDSFLLASYRPGGAAPDPSDGLPTGVMVAMAGPTP
TQPAPAATLAFANQPGLVETGGTVALPAIGPIVPDRPAASPVPAEQVDLALLSYANQRVNSATQVFDSVLKSDLDEKLIV
SWWADRGGNAGQAIHAPYINIGTWNSREEAGQVTRSLSKLGRLLMEEKAGPEGRVYVLSLVPDGRAEMDEMLQAAWAAGA
TDAFAIRD

Sequences:

>Translated_408_residues
MFFSGKDQVIAGRNLRGKRVNTGLACVGIVALSVFLAGCGSAVEKVSLKSSKEYFPESKYGVKASPRVAYGASKLPRGGG
RYQVGKPYQVKGRWYRPKEDPDYRAEGAASWYGDAFHGRLTANGEIYDMTHLTAAHPTMPLPSYARVTNMDNGSSVIVRV
NDRGPFAKGRVIDLSKRAAELLDYTHSGVARVQVEYVGPAPLEGRDDSFLLASYRPGGAAPDPSDGLPTGVMVAMAGPTP
TQPAPAATLAFANQPGLVETGGTVALPAIGPIVPDRPAASPVPAEQVDLALLSYANQRVNSATQVFDSVLKSDLDEKLIV
SWWADRGGNAGQAIHAPYINIGTWNSREEAGQVTRSLSKLGRLLMEEKAGPEGRVYVLSLVPDGRAEMDEMLQAAWAAGA
TDAFAIRD
>Mature_408_residues
MFFSGKDQVIAGRNLRGKRVNTGLACVGIVALSVFLAGCGSAVEKVSLKSSKEYFPESKYGVKASPRVAYGASKLPRGGG
RYQVGKPYQVKGRWYRPKEDPDYRAEGAASWYGDAFHGRLTANGEIYDMTHLTAAHPTMPLPSYARVTNMDNGSSVIVRV
NDRGPFAKGRVIDLSKRAAELLDYTHSGVARVQVEYVGPAPLEGRDDSFLLASYRPGGAAPDPSDGLPTGVMVAMAGPTP
TQPAPAATLAFANQPGLVETGGTVALPAIGPIVPDRPAASPVPAEQVDLALLSYANQRVNSATQVFDSVLKSDLDEKLIV
SWWADRGGNAGQAIHAPYINIGTWNSREEAGQVTRSLSKLGRLLMEEKAGPEGRVYVLSLVPDGRAEMDEMLQAAWAAGA
TDAFAIRD

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=106, Percent_Identity=46.2264150943396, Blast_Score=104, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 43434; Mature: 43434

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: PS00144 ASN_GLN_ASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFSGKDQVIAGRNLRGKRVNTGLACVGIVALSVFLAGCGSAVEKVSLKSSKEYFPESKY
CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCC
GVKASPRVAYGASKLPRGGGRYQVGKPYQVKGRWYRPKEDPDYRAEGAASWYGDAFHGRL
CCCCCCCEEECCCCCCCCCCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCCCEE
TANGEIYDMTHLTAAHPTMPLPSYARVTNMDNGSSVIVRVNDRGPFAKGRVIDLSKRAAE
ECCCEEEEEEEEEECCCCCCCCCCHHEECCCCCCEEEEEECCCCCCCCCCEEEHHHHHHH
LLDYTHSGVARVQVEYVGPAPLEGRDDSFLLASYRPGGAAPDPSDGLPTGVMVAMAGPTP
HHHHHCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCC
TQPAPAATLAFANQPGLVETGGTVALPAIGPIVPDRPAASPVPAEQVDLALLSYANQRVN
CCCCCCEEEEECCCCCEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SATQVFDSVLKSDLDEKLIVSWWADRGGNAGQAIHAPYINIGTWNSREEAGQVTRSLSKL
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHH
GRLLMEEKAGPEGRVYVLSLVPDGRAEMDEMLQAAWAAGATDAFAIRD
HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MFFSGKDQVIAGRNLRGKRVNTGLACVGIVALSVFLAGCGSAVEKVSLKSSKEYFPESKY
CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCC
GVKASPRVAYGASKLPRGGGRYQVGKPYQVKGRWYRPKEDPDYRAEGAASWYGDAFHGRL
CCCCCCCEEECCCCCCCCCCCEECCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCCCEE
TANGEIYDMTHLTAAHPTMPLPSYARVTNMDNGSSVIVRVNDRGPFAKGRVIDLSKRAAE
ECCCEEEEEEEEEECCCCCCCCCCHHEECCCCCCEEEEEECCCCCCCCCCEEEHHHHHHH
LLDYTHSGVARVQVEYVGPAPLEGRDDSFLLASYRPGGAAPDPSDGLPTGVMVAMAGPTP
HHHHHCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCC
TQPAPAATLAFANQPGLVETGGTVALPAIGPIVPDRPAASPVPAEQVDLALLSYANQRVN
CCCCCCEEEEECCCCCEEECCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SATQVFDSVLKSDLDEKLIVSWWADRGGNAGQAIHAPYINIGTWNSREEAGQVTRSLSKL
HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHH
GRLLMEEKAGPEGRVYVLSLVPDGRAEMDEMLQAAWAAGATDAFAIRD
HHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]