BacMap

Definition	Mesorhizobium sp. BNC1, complete genome.
Accession	NC_008254
Length	4,412,446

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The map label for this gene is yhdF [H]

Identifier: 110633878

GI number: 110633878

Start: 1642755

End: 1643606

Strand: Reverse

Name: yhdF [H]

Synonym: Meso_1525

Alternate gene names: 110633878

Gene position: 1643606-1642755 (Counterclockwise)

Preceding gene: 110633880

Following gene: 110633875

Centisome position: 37.25

GC content: 59.04

Gene sequence:

>852_bases
ATGAGCGAGCAAACACTTCCCAAACAGGAGCAGGAGCACCAGCCGGGCAAAGAGCATCAAATGCATCCGCGGCCGGAATT
CACGCCTCGGTATCGCGGCTCGGACCGCTTGAAGGATAAAGTGGCGGTGATTACCGGCGGAGATTCCGGCATTGGCCGCG
CGACCGCCATTCTCTTTGCTCGCGAGGGAGCCAAGGTGGCTTTCCTCTATAGGGACGAACAGAAGGATGCCGAGGAAACC
GAACGGCTGGTTGCCGCCGAAGGCGGCGATGTCTTCTCAATGCCAGGAGATGTCGGGGAAACCGAGACGGCTGAGCGCTT
CGTCAAAGCGGTGATCGAGCGGTTCGGGAAGATCGATGTCCTCGTGAACAATGCCGCCGAGCAGCATTATCAGGAAGAGC
TGACTGATATCTCAGACGAACAGCTGGAGCGCACCTATAAAACCAATATCTTCGGTATGTTCCGAATAACGCGGGCTGCC
CTTCCGCACATGCAAGAGGGCTCTTCCATCATCTGCACAACCTCCGTTACCGCGTTCAAAGGACAGGATGTCCTGATGGA
CTACGCTTCGACCAAGGGGGCCATCCTCGCCTTTGTGCGTGCGCTATCGGGTAATCTTGCTTCGAAGGGAATCCGCGTGA
ACGCGGTCGCGCCGGGTCCGATCTGGACGCCGCTCATCCCGGCATCTTTCCCCGCCGAGAAGGTCGCCAAGTTTGGCGGC
AACGTGCCGCTCGGACGGCCGGGTCAGCCCAATGAAGTGGCGCCTTGCATGTTGTTCCTCGCCTGCGAGGATTCATCCTA
CATCACTGGCCAGACGCTGCATCCGAACGGCGGAACGCTTGTGGGCGGATAA

Upstream 100 bases:

>100_bases
TCCCGAAAATCCGCCGCTCGCAGGAAAGTTCCGCAAAGGAGCGGAACAGGACGACCGGCCATCGTGTTCCTGACAGGAAT
GGAAAGCACGAGGCAGGACT

Downstream 100 bases:

>100_bases
GCTTCCGCCCTCTTAACGGTCCTGCTTCCGGTCGCTTTGCTCCCCTGAAACGGATGAGGTTCCCGGAGGCGGCGACCGGC
ATCAAGTTTTCAGCCTCTCC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSEQTLPKQEQEHQPGKEHQMHPRPEFTPRYRGSDRLKDKVAVITGGDSGIGRATAILFAREGAKVAFLYRDEQKDAEET
ERLVAAEGGDVFSMPGDVGETETAERFVKAVIERFGKIDVLVNNAAEQHYQEELTDISDEQLERTYKTNIFGMFRITRAA
LPHMQEGSSIICTTSVTAFKGQDVLMDYASTKGAILAFVRALSGNLASKGIRVNAVAPGPIWTPLIPASFPAEKVAKFGG
NVPLGRPGQPNEVAPCMLFLACEDSSYITGQTLHPNGGTLVGG

Sequences:

>Translated_283_residues
MSEQTLPKQEQEHQPGKEHQMHPRPEFTPRYRGSDRLKDKVAVITGGDSGIGRATAILFAREGAKVAFLYRDEQKDAEET
ERLVAAEGGDVFSMPGDVGETETAERFVKAVIERFGKIDVLVNNAAEQHYQEELTDISDEQLERTYKTNIFGMFRITRAA
LPHMQEGSSIICTTSVTAFKGQDVLMDYASTKGAILAFVRALSGNLASKGIRVNAVAPGPIWTPLIPASFPAEKVAKFGG
NVPLGRPGQPNEVAPCMLFLACEDSSYITGQTLHPNGGTLVGG
>Mature_282_residues
SEQTLPKQEQEHQPGKEHQMHPRPEFTPRYRGSDRLKDKVAVITGGDSGIGRATAILFAREGAKVAFLYRDEQKDAEETE
RLVAAEGGDVFSMPGDVGETETAERFVKAVIERFGKIDVLVNNAAEQHYQEELTDISDEQLERTYKTNIFGMFRITRAAL
PHMQEGSSIICTTSVTAFKGQDVLMDYASTKGAILAFVRALSGNLASKGIRVNAVAPGPIWTPLIPASFPAEKVAKFGGN
VPLGRPGQPNEVAPCMLFLACEDSSYITGQTLHPNGGTLVGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=33.201581027668, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI40254992, Length=242, Percent_Identity=34.297520661157, Blast_Score=118, Evalue=7e-27,
Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=32.2834645669291, Blast_Score=115, Evalue=3e-26,
Organism=Homo sapiens, GI59889578, Length=230, Percent_Identity=32.1739130434783, Blast_Score=110, Evalue=1e-24,
Organism=Homo sapiens, GI5031737, Length=269, Percent_Identity=30.4832713754647, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=30.8880308880309, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI10190704, Length=268, Percent_Identity=29.4776119402985, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI19923817, Length=256, Percent_Identity=26.953125, Blast_Score=95, Evalue=9e-20,
Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=31.25, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI7706318, Length=225, Percent_Identity=28, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI33667109, Length=214, Percent_Identity=31.7757009345794, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI126723191, Length=191, Percent_Identity=30.8900523560209, Blast_Score=88, Evalue=9e-18,
Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=30.6772908366534, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI210032110, Length=197, Percent_Identity=30.4568527918782, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI4504505, Length=243, Percent_Identity=27.5720164609054, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI31543615, Length=163, Percent_Identity=33.7423312883436, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI142976729, Length=205, Percent_Identity=29.2682926829268, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=29.2682926829268, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI20149619, Length=201, Percent_Identity=28.8557213930348, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI31542939, Length=207, Percent_Identity=27.536231884058, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI83715985, Length=256, Percent_Identity=28.90625, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI310128830, Length=173, Percent_Identity=30.0578034682081, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI310115468, Length=173, Percent_Identity=30.0578034682081, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI40807363, Length=190, Percent_Identity=28.4210526315789, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI4503301, Length=257, Percent_Identity=26.8482490272374, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI25282469, Length=216, Percent_Identity=31.0185185185185, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1789378, Length=279, Percent_Identity=41.2186379928315, Blast_Score=218, Evalue=5e-58,
Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=33.6065573770492, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=34.4398340248963, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1787905, Length=250, Percent_Identity=31.6, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=32.6923076923077, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=29.6442687747036, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=29.8387096774194, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1789208, Length=248, Percent_Identity=29.4354838709677, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI2367365, Length=233, Percent_Identity=31.3304721030043, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=28.5140562248996, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=27.843137254902, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787526, Length=262, Percent_Identity=24.0458015267176, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789057, Length=265, Percent_Identity=29.0566037735849, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=33.3333333333333, Blast_Score=127, Evalue=7e-30,
Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=32, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17560332, Length=262, Percent_Identity=33.969465648855, Blast_Score=124, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=33.0827067669173, Blast_Score=124, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=34.3511450381679, Blast_Score=123, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=33.5849056603774, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=35.4961832061069, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=33.969465648855, Blast_Score=121, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17560676, Length=245, Percent_Identity=29.3877551020408, Blast_Score=121, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=31.8181818181818, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=33.8645418326693, Blast_Score=120, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=32.183908045977, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=32.824427480916, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=32.5757575757576, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71994604, Length=246, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17563726, Length=258, Percent_Identity=31.7829457364341, Blast_Score=117, Evalue=7e-27,
Organism=Caenorhabditis elegans, GI17531453, Length=273, Percent_Identity=32.2344322344322, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI25147288, Length=249, Percent_Identity=32.5301204819277, Blast_Score=114, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=32.8301886792453, Blast_Score=114, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17544670, Length=264, Percent_Identity=31.8181818181818, Blast_Score=114, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=32.3308270676692, Blast_Score=112, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=31.9391634980989, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17560220, Length=263, Percent_Identity=33.0798479087452, Blast_Score=107, Evalue=9e-24,
Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=33.3333333333333, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=32.156862745098, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17567345, Length=193, Percent_Identity=31.0880829015544, Blast_Score=94, Evalue=8e-20,
Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=29.9610894941634, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=29.3172690763052, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17508651, Length=249, Percent_Identity=27.3092369477912, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=27.5590551181102, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17564282, Length=205, Percent_Identity=32.6829268292683, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=272, Percent_Identity=27.2058823529412, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=196, Percent_Identity=27.0408163265306, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17558006, Length=226, Percent_Identity=29.2035398230088, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=211, Percent_Identity=27.4881516587678, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=210, Percent_Identity=27.6190476190476, Blast_Score=69, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=26.4822134387352, Blast_Score=84, Evalue=3e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=255, Percent_Identity=25.4901960784314, Blast_Score=79, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6322861, Length=245, Percent_Identity=24.8979591836735, Blast_Score=72, Evalue=7e-14,
Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=33.4677419354839, Blast_Score=131, Evalue=4e-31,
Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=33.4677419354839, Blast_Score=127, Evalue=1e-29,
Organism=Drosophila melanogaster, GI21355319, Length=246, Percent_Identity=30.8943089430894, Blast_Score=120, Evalue=8e-28,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=32.9317269076305, Blast_Score=117, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=35.2, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI23397609, Length=253, Percent_Identity=31.6205533596838, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=30.3501945525292, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=32.6693227091633, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21358495, Length=198, Percent_Identity=29.7979797979798, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI281364892, Length=169, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=27.2357723577236, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24580925, Length=227, Percent_Identity=28.1938325991189, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641232, Length=209, Percent_Identity=30.1435406698565, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI18859837, Length=254, Percent_Identity=27.1653543307087, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24581726, Length=200, Percent_Identity=30, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI45554248, Length=209, Percent_Identity=25.8373205741627, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640117, Length=209, Percent_Identity=25.8373205741627, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24665247, Length=198, Percent_Identity=29.7979797979798, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI221331216, Length=198, Percent_Identity=29.7979797979798, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24665243, Length=197, Percent_Identity=28.9340101522843, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI221331218, Length=197, Percent_Identity=28.9340101522843, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24640492, Length=197, Percent_Identity=27.9187817258883, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281364494, Length=208, Percent_Identity=28.8461538461538, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 30724; Mature: 30593

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQTLPKQEQEHQPGKEHQMHPRPEFTPRYRGSDRLKDKVAVITGGDSGIGRATAILFA
CCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEE
REGAKVAFLYRDEQKDAEETERLVAAEGGDVFSMPGDVGETETAERFVKAVIERFGKIDV
ECCCEEEEEEECCCCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCEEE
LVNNAAEQHYQEELTDISDEQLERTYKTNIFGMFRITRAALPHMQEGSSIICTTSVTAFK
EECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECEEEEC
GQDVLMDYASTKGAILAFVRALSGNLASKGIRVNAVAPGPIWTPLIPASFPAEKVAKFGG
CCHHEEHHHCCCHHHHHHHHHHHCCHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCC
NVPLGRPGQPNEVAPCMLFLACEDSSYITGQTLHPNGGTLVGG
CCCCCCCCCCCCCCCEEEEEEECCCCEEECEEECCCCCEECCC
>Mature Secondary Structure 
SEQTLPKQEQEHQPGKEHQMHPRPEFTPRYRGSDRLKDKVAVITGGDSGIGRATAILFA
CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEE
REGAKVAFLYRDEQKDAEETERLVAAEGGDVFSMPGDVGETETAERFVKAVIERFGKIDV
ECCCEEEEEEECCCCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCEEE
LVNNAAEQHYQEELTDISDEQLERTYKTNIFGMFRITRAALPHMQEGSSIICTTSVTAFK
EECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECEEEEC
GQDVLMDYASTKGAILAFVRALSGNLASKGIRVNAVAPGPIWTPLIPASFPAEKVAKFGG
CCHHEEHHHCCCHHHHHHHHHHHCCHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCC
NVPLGRPGQPNEVAPCMLFLACEDSSYITGQTLHPNGGTLVGG
CCCCCCCCCCCCCCCEEEEEEECCCCEEECEEECCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]