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The map label for this gene is 110633826

Identifier: 110633826

GI number: 110633826

Start: 1570837

End: 1572102

Strand: Reverse

Name: 110633826

Synonym: Meso_1473

Alternate gene names: NA

Gene position: 1572102-1570837 (Counterclockwise)

Preceding gene: 110633827

Following gene: 110633825

Centisome position: 35.63

GC content: 65.32

Gene sequence:

>1266_bases
ATGAACGACATGGCCTGGATCGAGACTGCACTGACGGGCGCGCGCCCGCAGGCGATGGGTGCGCTTCTGCGCTATTTTCG
CGATCTCGACCGGGCGGAAGAGGCGTTTCAGGAGGCCTGCCTGCGCGCCATGAGGACATGGCCGGTGAAAGGGCCGCCGC
GCGATCCCGCCGCCTGGCTCATCTTCGTCGGCCGCAATGCGGCGCTCGATTCGGTGCGCCGCGACAGCCGCAACACGGCG
CTGCCCGAAGACTCGGCGATTTCCGAGCTCGGCGACGCCGAGGCGGACATGGCTGAAAGGCTCGACGATTCTCACTACCG
GGACGACATCCTGCGGCTGATGTTCATCTGCTGCCATCCGGATCTTCCGGCTACCCAGCAGGTGGCGCTGGCGCTGCGCA
TCGTCTCGGGCCTCTCGGTGCGGGAGATCGCAAGCGCCTTCCTCGTCAACGAAAAAGCAATGGAGCAGCGCATCACCCGA
GCCAAGCGCCGTGTGAGCGAGGCGAATGTGGCATTCGGGGCACCGGGCGCGGCGGAACGCGCCGAACGGCTCGCGGCTGT
GGCCGCCATGATCTACCTGATCTTCAACGAAGGTTACTCCGCAAGCGGCGGGGAAGTGCATGTGCGCGAACCGCTCTGCA
ACGAGGCGATCCGGCTGGCGCGGCTTCTTTTGAGACTGTTCCCGGCCGAGCCGGAGGTCATGGGGCTCTTGGCGCTGATG
CTCCTGCAGCATGCCCGAACGCCAGCACGCATCGATGGCAACGGCGATATCGTGCTCCTGGAGGAGCAGGATCGAAGCCA
GTGGAACCGCGATATGATCACGGAGGGACTGGCGCTGGTGGACAAGGCTATGCGCCACCGCAAGCCCGGCATCTATCAGG
TGCAGGCGGCGATCGCGGCGCTTCATGCGCGGGCGGCCAAGCCCGAGGATACGGATTGGCAGGAGATCAATCTCCTCTAT
CAAATGCTGGAGCGGCTGCAGCCCTCGCCCGTCATCCGGCTCAATCGCGCAGTCGCCCTGTTCAAGACGCAAGGACCGGA
AGCCGCGCTGCTGCTCATCGAGCCGTTGGAGGAGCGCCTTTCCAACTATTTCTATTTCCACGGCGTGCGCGGCGCGCTTT
TGATGGAACTCGGCCGGGAGCGGGAAGCGCGGACGGCCTTCGACAAGGCTATATCGCTCGCGCGCACGCCGGCCGAGGCA
GCGCATATCCGTCAGCAGATCGACCGGCTGATCAGCGACGCGAAGCCGCGGGCAAAGTCCGCCTAA

Upstream 100 bases:

>100_bases
TCGCCAAGCGCATGAAGGAAGGCGAGAGCTGCACCTTTGAAATCCGCCCCGTCCAGATCTTTGAAGAAGGCGTGCTCCCT
CAGAAGGTGAAAGTGGCATC

Downstream 100 bases:

>100_bases
TTTTTCGCTTCCTGTCGGATCGGCGCCTTCCCGAACGTCCTTGGAACGCAGCCTGCCAATGTTTCAGGAAAAGAAGGAGA
AGGACATGTCTGCAATCCAG

Product: RNA polymerase ECF-subfamily sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MNDMAWIETALTGARPQAMGALLRYFRDLDRAEEAFQEACLRAMRTWPVKGPPRDPAAWLIFVGRNAALDSVRRDSRNTA
LPEDSAISELGDAEADMAERLDDSHYRDDILRLMFICCHPDLPATQQVALALRIVSGLSVREIASAFLVNEKAMEQRITR
AKRRVSEANVAFGAPGAAERAERLAAVAAMIYLIFNEGYSASGGEVHVREPLCNEAIRLARLLLRLFPAEPEVMGLLALM
LLQHARTPARIDGNGDIVLLEEQDRSQWNRDMITEGLALVDKAMRHRKPGIYQVQAAIAALHARAAKPEDTDWQEINLLY
QMLERLQPSPVIRLNRAVALFKTQGPEAALLLIEPLEERLSNYFYFHGVRGALLMELGREREARTAFDKAISLARTPAEA
AHIRQQIDRLISDAKPRAKSA

Sequences:

>Translated_421_residues
MNDMAWIETALTGARPQAMGALLRYFRDLDRAEEAFQEACLRAMRTWPVKGPPRDPAAWLIFVGRNAALDSVRRDSRNTA
LPEDSAISELGDAEADMAERLDDSHYRDDILRLMFICCHPDLPATQQVALALRIVSGLSVREIASAFLVNEKAMEQRITR
AKRRVSEANVAFGAPGAAERAERLAAVAAMIYLIFNEGYSASGGEVHVREPLCNEAIRLARLLLRLFPAEPEVMGLLALM
LLQHARTPARIDGNGDIVLLEEQDRSQWNRDMITEGLALVDKAMRHRKPGIYQVQAAIAALHARAAKPEDTDWQEINLLY
QMLERLQPSPVIRLNRAVALFKTQGPEAALLLIEPLEERLSNYFYFHGVRGALLMELGREREARTAFDKAISLARTPAEA
AHIRQQIDRLISDAKPRAKSA
>Mature_421_residues
MNDMAWIETALTGARPQAMGALLRYFRDLDRAEEAFQEACLRAMRTWPVKGPPRDPAAWLIFVGRNAALDSVRRDSRNTA
LPEDSAISELGDAEADMAERLDDSHYRDDILRLMFICCHPDLPATQQVALALRIVSGLSVREIASAFLVNEKAMEQRITR
AKRRVSEANVAFGAPGAAERAERLAAVAAMIYLIFNEGYSASGGEVHVREPLCNEAIRLARLLLRLFPAEPEVMGLLALM
LLQHARTPARIDGNGDIVLLEEQDRSQWNRDMITEGLALVDKAMRHRKPGIYQVQAAIAALHARAAKPEDTDWQEINLLY
QMLERLQPSPVIRLNRAVALFKTQGPEAALLLIEPLEERLSNYFYFHGVRGALLMELGREREARTAFDKAISLARTPAEA
AHIRQQIDRLISDAKPRAKSA

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 47072; Mature: 47072

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDMAWIETALTGARPQAMGALLRYFRDLDRAEEAFQEACLRAMRTWPVKGPPRDPAAWL
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
IFVGRNAALDSVRRDSRNTALPEDSAISELGDAEADMAERLDDSHYRDDILRLMFICCHP
EEECCCHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHCCC
DLPATQQVALALRIVSGLSVREIASAFLVNEKAMEQRITRAKRRVSEANVAFGAPGAAER
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AERLAAVAAMIYLIFNEGYSASGGEVHVREPLCNEAIRLARLLLRLFPAEPEVMGLLALM
HHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LLQHARTPARIDGNGDIVLLEEQDRSQWNRDMITEGLALVDKAMRHRKPGIYQVQAAIAA
HHHHCCCCCEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LHARAAKPEDTDWQEINLLYQMLERLQPSPVIRLNRAVALFKTQGPEAALLLIEPLEERL
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHEEEEECCCCCEEEEEHHHHHHHH
SNYFYFHGVRGALLMELGREREARTAFDKAISLARTPAEAAHIRQQIDRLISDAKPRAKS
HHHEEHHCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC
A
C
>Mature Secondary Structure
MNDMAWIETALTGARPQAMGALLRYFRDLDRAEEAFQEACLRAMRTWPVKGPPRDPAAWL
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
IFVGRNAALDSVRRDSRNTALPEDSAISELGDAEADMAERLDDSHYRDDILRLMFICCHP
EEECCCHHHHHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHCCC
DLPATQQVALALRIVSGLSVREIASAFLVNEKAMEQRITRAKRRVSEANVAFGAPGAAER
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
AERLAAVAAMIYLIFNEGYSASGGEVHVREPLCNEAIRLARLLLRLFPAEPEVMGLLALM
HHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LLQHARTPARIDGNGDIVLLEEQDRSQWNRDMITEGLALVDKAMRHRKPGIYQVQAAIAA
HHHHCCCCCEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LHARAAKPEDTDWQEINLLYQMLERLQPSPVIRLNRAVALFKTQGPEAALLLIEPLEERL
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHEEEEECCCCCEEEEEHHHHHHHH
SNYFYFHGVRGALLMELGREREARTAFDKAISLARTPAEAAHIRQQIDRLISDAKPRAKS
HHHEEHHCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]