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The map label for this gene is radC [C]

Identifier: 110633807

GI number: 110633807

Start: 1550243

End: 1550998

Strand: Reverse

Name: radC [C]

Synonym: Meso_1454

Alternate gene names: 110633807

Gene position: 1550998-1550243 (Counterclockwise)

Preceding gene: 110633808

Following gene: 110633798

Centisome position: 35.15

GC content: 61.64

Gene sequence:

>756_bases
ATGGCGGAAAGCGGCAACGGCGGGTTCAGCGAAGGTGCGCTGCGCACAACAGAGAACGTACCGGGCAAGACGGAAACACG
TATCAAGAAGCATTACGAAGGCCACCGCGAGCGCTTGCGCGAGCGTTTTAACGAGGCCGGCGCGGATGCGCTTGCCGACT
ATGAGCTTTTGGAGATGGTGTTGTTCCGCTCCGTGCCACGCGCCGACACCAAGTGCGCGGCCAAGGCACTGCTCAACCGA
TTCGGCTCGATCGGCGAGGTTCTGGGGGCGCCGGAACAACGCTTGAGGGAGGTGGAGGGCATCGGCGAGGCGGCCGCCCG
TGACCTCAAGCTGATCGCCGCGCTCACGCAGCGCATGCTGCGCAGCGAGGTGCGTGGAAAGCAGGTGCTTTCCTCCTGGA
CCCAGGTGCTAGACTATTGCCGCGCGGCGATGGCCTATGAGGATCGCGAGCAGTTTCGGATACTCTTTCTCGACAAGAAG
AACGCGCTGATCAAGGACGAGTGCCAGCAGACCGGCACGGTGGATCATACGCCTGTCTATCCGCGCGAGGTGGTAAAGCG
CGCTCTGGAACTATCGGCAAGCGCCATCATCCTGGTCCACAATCATCCCTCGGGCGACCCGACCCCTTCGCGGGCCGATA
TAGAGATGACGAAGCTGATCGCGTCGACGGCGGAGCCGCTGGGAATCACCGTGCACGATCACATCATTATCGGCAAAAAG
GGCCATGCCAGCATGAAGGGTATGCGGCTGTTTTGA

Upstream 100 bases:

>100_bases
AAACAGGCTGTGAAATTTTCACTCTCTCTCCAGCAGGGCTTGATCGCCCCGGCCTCCCATAGTTACCCTGTAGTCGATTG
GGGACGGGGCAAAGCTGATC

Downstream 100 bases:

>100_bases
GCGAAGCAGCGAGGGTGACCAGGGGTTGTTGATCGACGCGGCTTTCTTGCTGCGGCCTCACCGCCTCGGTCTATTCGCTA
TTCCTTATTCCGCCGCCTCT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MAESGNGGFSEGALRTTENVPGKTETRIKKHYEGHRERLRERFNEAGADALADYELLEMVLFRSVPRADTKCAAKALLNR
FGSIGEVLGAPEQRLREVEGIGEAAARDLKLIAALTQRMLRSEVRGKQVLSSWTQVLDYCRAAMAYEDREQFRILFLDKK
NALIKDECQQTGTVDHTPVYPREVVKRALELSASAIILVHNHPSGDPTPSRADIEMTKLIASTAEPLGITVHDHIIIGKK
GHASMKGMRLF

Sequences:

>Translated_251_residues
MAESGNGGFSEGALRTTENVPGKTETRIKKHYEGHRERLRERFNEAGADALADYELLEMVLFRSVPRADTKCAAKALLNR
FGSIGEVLGAPEQRLREVEGIGEAAARDLKLIAALTQRMLRSEVRGKQVLSSWTQVLDYCRAAMAYEDREQFRILFLDKK
NALIKDECQQTGTVDHTPVYPREVVKRALELSASAIILVHNHPSGDPTPSRADIEMTKLIASTAEPLGITVHDHIIIGKK
GHASMKGMRLF
>Mature_250_residues
AESGNGGFSEGALRTTENVPGKTETRIKKHYEGHRERLRERFNEAGADALADYELLEMVLFRSVPRADTKCAAKALLNRF
GSIGEVLGAPEQRLREVEGIGEAAARDLKLIAALTQRMLRSEVRGKQVLSSWTQVLDYCRAAMAYEDREQFRILFLDKKN
ALIKDECQQTGTVDHTPVYPREVVKRALELSASAIILVHNHPSGDPTPSRADIEMTKLIASTAEPLGITVHDHIIIGKKG
HASMKGMRLF

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=206, Percent_Identity=34.9514563106796, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI2367100, Length=143, Percent_Identity=43.3566433566434, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788997, Length=101, Percent_Identity=46.5346534653465, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788312, Length=101, Percent_Identity=45.5445544554455, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 27892; Mature: 27761

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAESGNGGFSEGALRTTENVPGKTETRIKKHYEGHRERLRERFNEAGADALADYELLEMV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
LFRSVPRADTKCAAKALLNRFGSIGEVLGAPEQRLREVEGIGEAAARDLKLIAALTQRML
HHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSEVRGKQVLSSWTQVLDYCRAAMAYEDREQFRILFLDKKNALIKDECQQTGTVDHTPVY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCC
PREVVKRALELSASAIILVHNHPSGDPTPSRADIEMTKLIASTAEPLGITVHDHIIIGKK
HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECEEEEECC
GHASMKGMRLF
CCCCCCCCCCC
>Mature Secondary Structure 
AESGNGGFSEGALRTTENVPGKTETRIKKHYEGHRERLRERFNEAGADALADYELLEMV
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
LFRSVPRADTKCAAKALLNRFGSIGEVLGAPEQRLREVEGIGEAAARDLKLIAALTQRML
HHHCCCCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSEVRGKQVLSSWTQVLDYCRAAMAYEDREQFRILFLDKKNALIKDECQQTGTVDHTPVY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCC
PREVVKRALELSASAIILVHNHPSGDPTPSRADIEMTKLIASTAEPLGITVHDHIIIGKK
HHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECEEEEECC
GHASMKGMRLF
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA