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The map label for this gene is vjbR [H]

Identifier: 110633760

GI number: 110633760

Start: 1503535

End: 1504260

Strand: Reverse

Name: vjbR [H]

Synonym: Meso_1407

Alternate gene names: 110633760

Gene position: 1504260-1503535 (Counterclockwise)

Preceding gene: 110633761

Following gene: 110633752

Centisome position: 34.09

GC content: 57.85

Gene sequence:

>726_bases
ATGCTTGGTGGCCAGGACGACGCCCTTCAAGCTGGGATCGTGGAAACTGTACGGAGCGCGAAGAATATTGAGGAGGCTAT
ATTCTTATTGCGTGACGGCCTCGGCCTCGCGCATGTGAGCTTCCATCTGAATGTTTCCGGAGCAGCCCCGCTGGATTATC
CCTATGTGAGGACGACTCTCCCCTCACAGTGGATCTCCCGCTACGTTCTGCGTACGTATGTCGGTCACGATCCGGTGATG
CGCGAAGGCTTTTCATCCCTGCGCCCCTTTTCATGGCACGAGCTCGAAATGAGCGAAAAGGAGCGGGAGTTCATGGAGGA
TGCCCGTTCCCACGGTATCGGCGCCCAAGGCTATTCAATTCCGACGGTGGATCGGTTCTCCCGTCGCTCGCTTCTGTCGT
TGACAGCCGATCTCGACCTTGGCCTCTGGGCGGGTTTCATCCGCCGGCATGCTTCATCAGTGATCGAAATTTCTCAGGTC
TTGCACCAAAAGGCGCTTAATGAACTGGGGATCGGTGAGCCGTCCGGCGCAACCTTGGCGCCGCGCGAGAGGGAATGCCT
ACTGTGGACCGCTCGAGGCAAGGATTCGAAGGATATCGCCGGGATTCTCGATCTGTCCGAGTATACGGTGCGCAGCTATT
TGAGAACTGCGCGGCAAAAGCTGCAATGCAGAACGCTTTCACAGGCGGTGGCCACGGCCACGCGGCAACGGATCATCGAT
CCCTAG

Upstream 100 bases:

>100_bases
AAACTTCTTTTTGCATAAGGCATTTTTTCGCAGCTCAAATTATACTTGCATTACTCTACCTTCCCGAGCATTCTCAAATT
GGGACAGAAATGAGGGCTGT

Downstream 100 bases:

>100_bases
ACCATCGGCATCGAGCCAAACGGCTCCGATTAATGCTTCTAAGAAACTTCGTCTTACTCAGCTTCTGGAGGTCAGTGGTC
CTTCGAGCGGCATCGTGCAT

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLGGQDDALQAGIVETVRSAKNIEEAIFLLRDGLGLAHVSFHLNVSGAAPLDYPYVRTTLPSQWISRYVLRTYVGHDPVM
REGFSSLRPFSWHELEMSEKEREFMEDARSHGIGAQGYSIPTVDRFSRRSLLSLTADLDLGLWAGFIRRHASSVIEISQV
LHQKALNELGIGEPSGATLAPRERECLLWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRIID
P

Sequences:

>Translated_241_residues
MLGGQDDALQAGIVETVRSAKNIEEAIFLLRDGLGLAHVSFHLNVSGAAPLDYPYVRTTLPSQWISRYVLRTYVGHDPVM
REGFSSLRPFSWHELEMSEKEREFMEDARSHGIGAQGYSIPTVDRFSRRSLLSLTADLDLGLWAGFIRRHASSVIEISQV
LHQKALNELGIGEPSGATLAPRERECLLWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRIID
P
>Mature_241_residues
MLGGQDDALQAGIVETVRSAKNIEEAIFLLRDGLGLAHVSFHLNVSGAAPLDYPYVRTTLPSQWISRYVLRTYVGHDPVM
REGFSSLRPFSWHELEMSEKEREFMEDARSHGIGAQGYSIPTVDRFSRRSLLSLTADLDLGLWAGFIRRHASSVIEISQV
LHQKALNELGIGEPSGATLAPRERECLLWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRIID
P

Specific function: Transcriptional regulator mediating the effects of the quorum sensing autoinducer C12-HSL (N-dodecanoyl-homoserine lactone) [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26952; Mature: 26952

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGGQDDALQAGIVETVRSAKNIEEAIFLLRDGLGLAHVSFHLNVSGAAPLDYPYVRTTL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHCC
PSQWISRYVLRTYVGHDPVMREGFSSLRPFSWHELEMSEKEREFMEDARSHGIGAQGYSI
CHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PTVDRFSRRSLLSLTADLDLGLWAGFIRRHASSVIEISQVLHQKALNELGIGEPSGATLA
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PRERECLLWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRIID
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
P
C
>Mature Secondary Structure
MLGGQDDALQAGIVETVRSAKNIEEAIFLLRDGLGLAHVSFHLNVSGAAPLDYPYVRTTL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHCC
PSQWISRYVLRTYVGHDPVMREGFSSLRPFSWHELEMSEKEREFMEDARSHGIGAQGYSI
CHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PTVDRFSRRSLLSLTADLDLGLWAGFIRRHASSVIEISQVLHQKALNELGIGEPSGATLA
CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PRERECLLWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATRQRIID
CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
P
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA